Detailed information NTG0437631

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IM720_RS07800
• Genome accession: NZ_CP063233
• Coordinates: 1750364..1751368 (+)
• Length: 334 a.a.
• NCBI ID: WP_024073849.1
• Uniprot ID: A0ACA7P2U2
• Organism: Pseudomonas fluorescens strain KF1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1745364..1756368

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IM720_RS07770 (IM720_07770)	fghA	1745370..1746215 (+)	846	WP_069075388.1	S-formylglutathione hydrolase	-
IM720_RS07775 (IM720_07775)	ispF	1746270..1746743 (+)	474	WP_024073845.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IM720_RS07780 (IM720_07780)	truD	1746740..1747798 (+)	1059	WP_069075387.1	tRNA pseudouridine(13) synthase TruD	-
IM720_RS07785 (IM720_07785)	surE	1747786..1748535 (+)	750	WP_024073847.1	5'/3'-nucleotidase SurE	-
IM720_RS07790 (IM720_07790)	-	1748577..1749212 (+)	636	WP_169850588.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IM720_RS07795 (IM720_07795)	-	1749421..1750257 (+)	837	WP_024073848.1	peptidoglycan DD-metalloendopeptidase family protein	-
IM720_RS07800 (IM720_07800)	rpoS	1750364..1751368 (+)	1005	WP_024073849.1	RNA polymerase sigma factor RpoS	Regulator
IM720_RS07805 (IM720_07805)	-	1751579..1751788 (-)	210	WP_002554837.1	cold-shock protein	-
IM720_RS07810 (IM720_07810)	dcd	1752177..1752743 (+)	567	WP_003189215.1	dCTP deaminase	-
IM720_RS07815 (IM720_07815)	-	1752851..1753048 (+)	198	WP_024073850.1	hypothetical protein	-
IM720_RS07820 (IM720_07820)	pdeM	1753052..1753702 (-)	651	WP_193690249.1	ligase-associated DNA damage response endonuclease PdeM	-
IM720_RS07825 (IM720_07825)	-	1753702..1756182 (-)	2481	WP_193690250.1	ligase-associated DNA damage response DEXH box helicase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38075.31 Da
• Isoelectric Point: 5.0358

>NTDB_id=437631 IM720_RS07800 WP_024073849.1 1750364..1751368(+) (rpoS) [Pseudomonas fluorescens strain KF1]
MALSKEAPEFDIDDEVLLMETGIATESMSNEGPAVPSVRTKSKNSAALKQHKYIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVGLEIGLTRERVRQIQVEGLKRLRE
ILEKNGLSSESLFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=437631 IM720_RS07800 WP_024073849.1 1750364..1751368(+) (rpoS) [Pseudomonas fluorescens strain KF1]
ATGGCTCTCAGTAAAGAAGCGCCGGAGTTTGACATCGACGATGAGGTTCTCCTTATGGAGACCGGCATCGCTACGGAATC
GATGTCGAATGAGGGACCTGCTGTACCTTCAGTTCGCACCAAATCCAAGAACTCCGCTGCGTTAAAGCAACACAAGTACA
TTGACTACACGCGGGCGCTAGACGCCACCCAGCTGTATCTCAATGAAATCGGCTTTTCCCCTTTGCTGACTCCCGAAGAA
GAAGTCCATTTTGCGCGCTTGTCGCAAAAGGGTGATCCGGCTGGGCGCAAGCGCATGATTGAAAGCAACCTGCGTCTGGT
GGTGAAAATCGCCCGACGCTACGTCAATCGTGGACTGTCCCTGTTGGACCTGATCGAGGAGGGCAACCTGGGCTTGATCC
GGGCGGTGGAGAAGTTCGACCCTGAGCGGGGCTTCCGCTTTTCGACCTACGCCACCTGGTGGATTCGTCAGACCATCGAA
CGGGCGATCATGAATCAGACCCGAACGATCCGGTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTTCGGGCGGC
GCGTGAGCTCACACAAAAACTCGATCATGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTAGGGGAGG
TCAAGCGTATGCTCGGACTTAACGAGCGCGTGTCTTCGGTCGATGTCTCGCTGGGTCCGGATTCGGATAAAACCCTGCTG
GATACCCTGACGGATGATCGTCCGACAGATCCTTGCGAACTGTTGCAGGACGATGATCTTTCCCAAAGCATTGACCAGTG
GCTCTCTGAGCTCACGGACAAGCAGCGTGAAGTGGTGATACGTCGCTTCGGCCTGCGTGGTCATGAGAGCAGTACCCTGG
AGGACGTAGGCCTGGAGATCGGCCTGACCCGTGAGCGGGTGCGGCAGATCCAGGTGGAAGGGCTCAAGCGCCTGCGTGAG
ATCCTGGAGAAGAATGGCTTGTCGAGTGAGTCGTTGTTTCAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.465	99.102	0.659