Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HFT84_RS08875 Genome accession   NZ_CP051320
Coordinates   1855717..1856322 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Muenster strain CVM 34526     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850717..1861322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HFT84_RS08855 (HFT84_08840) - 1851112..1852872 (-) 1761 WP_000156458.1 AAA family ATPase -
  HFT84_RS08860 (HFT84_08845) matP 1853058..1853510 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  HFT84_RS08865 (HFT84_08850) ompA 1853582..1854634 (-) 1053 WP_001562588.1 porin OmpA -
  HFT84_RS08870 (HFT84_08855) sulA 1854991..1855500 (-) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  HFT84_RS08875 (HFT84_08860) sxy/tfoX 1855717..1856322 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  HFT84_RS08880 (HFT84_08865) yccS 1856309..1858462 (-) 2154 WP_023137048.1 YccS family putative transporter -
  HFT84_RS08885 (HFT84_08870) - 1858481..1858927 (-) 447 WP_001261222.1 YccF domain-containing protein -
  HFT84_RS08890 (HFT84_08875) helD 1859051..1861105 (+) 2055 WP_023137047.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=437493 HFT84_RS08875 WP_001202375.1 1855717..1856322(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Muenster strain CVM 34526]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=437493 HFT84_RS08875 WP_001202375.1 1855717..1856322(+) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Muenster strain CVM 34526]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751