Detailed information NTG0437371

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: INR48_RS16750
• Genome accession: NZ_CP063153
• Coordinates: 3512728..3513720 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain M7424
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3507728..3518720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INR48_RS16725 (INR48_16730)	pphB	3509088..3509744 (+)	657	WP_001139307.1	protein-serine/threonine phosphatase	-
INR48_RS16730 (INR48_16735)	-	3509786..3510022 (-)	237	WP_000562983.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
INR48_RS16735 (INR48_16740)	-	3510033..3511460 (-)	1428	WP_000863184.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
INR48_RS16740 (INR48_16745)	-	3511460..3512053 (-)	594	WP_001237176.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
INR48_RS16745 (INR48_16750)	-	3512200..3512607 (+)	408	WP_001208065.1	MarR family transcriptional regulator	-
INR48_RS16750 (INR48_16755)	rpoS	3512728..3513720 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
INR48_RS16755 (INR48_16760)	nlpD	3513783..3514922 (-)	1140	WP_001272592.1	murein hydrolase activator NlpD	-
INR48_RS16760 (INR48_16765)	pcm	3515062..3515688 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
INR48_RS16765 (INR48_16770)	surE	3515682..3516443 (-)	762	WP_001305779.1	5'/3'-nucleotidase SurE	-
INR48_RS16770 (INR48_16775)	truD	3516424..3517473 (-)	1050	WP_000568953.1	tRNA pseudouridine(13) synthase TruD	-
INR48_RS16775 (INR48_16780)	ispF	3517470..3517949 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
INR48_RS16780 (INR48_16785)	ispD	3517949..3518659 (-)	711	WP_000246141.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=437371 INR48_RS16750 WP_000081550.1 3512728..3513720(-) (rpoS) [Escherichia coli strain M7424]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=437371 INR48_RS16750 WP_000081550.1 3512728..3513720(-) (rpoS) [Escherichia coli strain M7424]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGACGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
GAAAGCCTTAGTTGAAGAGGAACCCAGTGATAACGATTTGGCTGAAGAGGAGCTGTTATCGCAAGGGGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCGCCACTGTTAACGGCCGAAGAAGAAGTTTATTTCGCG
CGTCGCGCACTGCGTGGAGATGTCGCTTCACGTCGCCGGATGATTGAAAGTAACCTGCGTCTGGTCGTGAAGATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGCTGTTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATCCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715