Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HF896_RS18145 Genome accession   NZ_CP051298
Coordinates   3775962..3776366 (-) Length   134 a.a.
NCBI ID   WP_013520430.1    Uniprot ID   A0A420KBZ9
Organism   Alicycliphilus denitrificans strain DP3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3770962..3781366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF896_RS18130 (HF896_18130) - 3772768..3775032 (-) 2265 WP_013520427.1 methyl-accepting chemotaxis protein -
  HF896_RS18135 (HF896_18135) - 3775053..3775580 (-) 528 WP_013520428.1 chemotaxis protein CheW -
  HF896_RS18140 (HF896_18140) - 3775597..3775962 (-) 366 WP_013520429.1 response regulator -
  HF896_RS18145 (HF896_18145) pilG 3775962..3776366 (-) 405 WP_013520430.1 response regulator Regulator
  HF896_RS18150 (HF896_18150) - 3776418..3776591 (-) 174 WP_081462186.1 rubredoxin -
  HF896_RS18155 (HF896_18155) - 3776731..3777633 (+) 903 WP_013520432.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HF896_RS18160 (HF896_18160) hemL 3777617..3778921 (+) 1305 WP_059401415.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HF896_RS18165 (HF896_18165) purH 3779023..3780627 (-) 1605 WP_174764565.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  HF896_RS18170 (HF896_18170) - 3780703..3780939 (-) 237 WP_013520435.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14827.06 Da        Isoelectric Point: 7.7124

>NTDB_id=437321 HF896_RS18145 WP_013520430.1 3775962..3776366(-) (pilG) [Alicycliphilus denitrificans strain DP3]
MATTTTGSTFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYRPQLIFCDILMPKLDGYQTCAIIKRNAR
FADTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLQAVQQFGNAQQGAM

Nucleotide


Download         Length: 405 bp        

>NTDB_id=437321 HF896_RS18145 WP_013520430.1 3775962..3776366(-) (pilG) [Alicycliphilus denitrificans strain DP3]
TTGGCTACGACGACAACCGGTTCCACCTTCAAGGTCCTCGTGGTGGACGATAGCAACACCATCCGGCGCAGCGCCGAGAT
CTTCCTCAAGCAGGGCGGCCACGAGGTGCTGCTCGCGGACGACGGCTTTGACGCCCTGGCCAAGGTCAACGATTACCGGC
CCCAGCTGATCTTCTGCGACATCCTGATGCCCAAGCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCCCGT
TTCGCCGATACGCCGGTGGTCATGCTGTCGTCCAAGGACGGCGTCTTCGACAAGGCGCGCGGCCGCATGGTCGGCTGCCA
GGAATACCTCACCAAGCCATTCACCAAAGACCAGTTGCTGCAGGCCGTGCAGCAATTCGGAAATGCGCAACAAGGAGCCA
TGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A420KBZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.265

87.313

0.5