Detailed information NTG0437320

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HF896_RS17600
• Genome accession: NZ_CP051298
• Coordinates: 3659286..3660410 (+)
• Length: 374 a.a.
• NCBI ID: WP_013520251.1
• Uniprot ID: A0A858ZWX9
• Organism: Alicycliphilus denitrificans strain DP3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3654286..3665410

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF896_RS17575 (HF896_17575)	-	3654781..3655095 (+)	315	WP_013520246.1	BON domain-containing protein	-
HF896_RS17580 (HF896_17580)	coaD	3655251..3655739 (-)	489	WP_013520247.1	pantetheine-phosphate adenylyltransferase	-
HF896_RS17585 (HF896_17585)	rsmD	3655867..3656457 (-)	591	WP_013520248.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HF896_RS17590 (HF896_17590)	-	3656454..3657812 (-)	1359	WP_013520249.1	pitrilysin family protein	-
HF896_RS17595 (HF896_17595)	-	3657826..3659256 (-)	1431	WP_013520250.1	pitrilysin family protein	-
HF896_RS17600 (HF896_17600)	pilA	3659286..3660410 (+)	1125	WP_013520251.1	signal recognition particle-docking protein FtsY	Machinery gene
HF896_RS17605 (HF896_17605)	-	3660424..3661377 (-)	954	WP_013520252.1	LysR family transcriptional regulator	-
HF896_RS17610 (HF896_17610)	-	3661496..3662434 (+)	939	WP_013520253.1	dihydrodipicolinate synthase family protein	-
HF896_RS17615 (HF896_17615)	-	3662466..3663431 (+)	966	WP_013520254.1	tripartite tricarboxylate transporter substrate binding protein	-
HF896_RS17620 (HF896_17620)	-	3663421..3664125 (+)	705	WP_013520255.1	SDR family oxidoreductase	-
HF896_RS17625 (HF896_17625)	-	3664151..3665317 (+)	1167	WP_013520256.1	mandelate racemase/muconate lactonizing enzyme family protein	-

Sequence

Protein

• Length: 374 a.a.
• Molecular weight: 38982.53 Da
• Isoelectric Point: 5.9996

>NTDB_id=437320 HF896_RS17600 WP_013520251.1 3659286..3660410(+) (pilA) [Alicycliphilus denitrificans strain DP3]
MFSFFKKKSPSPAEPSSAPVPDAASAPAADAPTGGGALGWLRKSFGAQDAAAPQAAPAADEAPPAVPEPAPKPEGTRQGW
MERLKSGLRKTGGSIATVFTGTQINDALYEELEDALLMADTGVKATQHLLADLRRRVKEAKATEPAAVKALLADALADLL
RPLEKPLVIGAHQPTVIMVAGVNGAGKTTSIGKLTRHLADHGESVLLAAADTFRAAAREQLGVWATRNTVEIISQEGGDP
AAVSFDAVTAGRARGKDVVLVDTAGRLPTQLHLMEELKKIKRVVTKADATAPHEVLLVIDGNTGQNALAQVRAFDDALSL
TGLIVTKLDGTAKGGVLAAIAQERPVPVYFIGVGEKVEDLETFDAREFAQALLA

Nucleotide

• Length: 1125 bp

>NTDB_id=437320 HF896_RS17600 WP_013520251.1 3659286..3660410(+) (pilA) [Alicycliphilus denitrificans strain DP3]
ATGTTCAGTTTTTTCAAGAAGAAATCCCCCTCCCCCGCCGAGCCGTCCAGCGCGCCGGTGCCGGATGCCGCCAGCGCCCC
CGCGGCCGACGCGCCCACGGGCGGCGGCGCGCTCGGCTGGCTGCGCAAGTCCTTCGGCGCGCAGGACGCCGCCGCACCGC
AGGCCGCGCCTGCGGCGGACGAGGCCCCGCCCGCCGTGCCCGAGCCCGCCCCCAAGCCCGAAGGCACGCGCCAGGGCTGG
ATGGAGCGCCTCAAGTCCGGCCTGCGCAAGACCGGCGGCAGCATCGCCACCGTCTTCACGGGCACGCAGATCAACGACGC
GCTGTACGAGGAGCTCGAGGATGCCCTGCTCATGGCCGACACCGGCGTGAAGGCCACGCAGCACCTGCTGGCCGACCTCA
GGCGCCGCGTGAAGGAGGCCAAGGCCACCGAGCCCGCCGCCGTCAAGGCCCTGCTGGCCGACGCGCTGGCCGACCTGCTG
CGCCCGCTGGAAAAGCCCCTGGTCATCGGCGCGCATCAGCCCACCGTGATCATGGTGGCCGGCGTGAACGGCGCGGGCAA
GACCACCTCCATCGGCAAGCTCACCAGGCACCTGGCCGACCACGGCGAGAGCGTGCTGCTGGCCGCGGCCGACACCTTCC
GCGCCGCGGCGCGCGAGCAGCTCGGCGTCTGGGCCACGCGCAACACGGTGGAGATCATCAGCCAGGAAGGGGGCGACCCC
GCCGCCGTGAGCTTCGACGCCGTCACCGCCGGCCGCGCGCGCGGCAAGGACGTGGTGCTGGTGGACACGGCCGGGCGCCT
GCCCACGCAGCTGCACCTGATGGAGGAGCTCAAGAAGATCAAGCGCGTCGTGACCAAGGCCGACGCCACGGCCCCGCACG
AGGTGCTGCTGGTGATCGACGGCAACACCGGCCAGAACGCCCTGGCCCAGGTGCGCGCGTTCGACGACGCGCTCTCGCTC
ACCGGCCTCATCGTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTGGCCGCCATCGCGCAGGAGCGGCCCGTGCC
CGTCTACTTCATCGGCGTGGGCGAGAAGGTGGAAGACCTGGAGACCTTCGACGCGCGCGAGTTCGCGCAGGCGCTGCTGG
CCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (93-156)

• SRP54-type protein, GTPase domain (SRP54) (174-373)

3D structure

• AlphaFold DB: A0A858ZWX9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50	100	0.556