Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IMZ18_RS20915 Genome accession   NZ_CP063151
Coordinates   3951039..3952172 (+) Length   377 a.a.
NCBI ID   WP_014481175.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3946039..3957172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS20885 (IMZ18_20885) ywmC 3946848..3947531 (+) 684 WP_014481181.1 VWA domain-containing protein -
  IMZ18_RS20890 (IMZ18_20890) - 3947662..3947802 (+) 141 WP_014481180.1 hypothetical protein -
  IMZ18_RS20895 (IMZ18_20895) ywmD 3947855..3948529 (+) 675 WP_014481179.1 VWA domain-containing protein -
  IMZ18_RS20900 (IMZ18_20900) - 3948624..3948785 (+) 162 WP_003227706.1 hypothetical protein -
  IMZ18_RS20905 (IMZ18_20905) fdhD 3949018..3949806 (+) 789 WP_014481178.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  IMZ18_RS20910 (IMZ18_20910) moaA 3949822..3950847 (+) 1026 WP_014481177.1 GTP 3',8-cyclase MoaA -
  IMZ18_RS20915 (IMZ18_20915) rapC 3951039..3952172 (+) 1134 WP_014481175.1 response regulator aspartate phosphatase RapB Regulator
  IMZ18_RS20920 (IMZ18_20920) - 3952328..3952807 (+) 480 WP_026113664.1 hypothetical protein -
  IMZ18_RS20925 (IMZ18_20925) csbD 3952880..3953068 (+) 189 WP_014481173.1 stress response protein CsbD -
  IMZ18_RS22840 - 3953281..3953449 (+) 169 Protein_4107 urea ABC transporter substrate-binding protein -
  IMZ18_RS20935 (IMZ18_20935) - 3953760..3953918 (+) 159 WP_158332665.1 hypothetical protein -
  IMZ18_RS20940 (IMZ18_20940) ureA 3954112..3954428 (+) 317 Protein_4109 urease subunit gamma -
  IMZ18_RS20945 (IMZ18_20945) ureB 3954425..3954799 (+) 375 WP_193490614.1 urease subunit beta -
  IMZ18_RS20950 (IMZ18_20950) ureC 3954796..3956505 (+) 1710 WP_014481168.1 urease subunit alpha -
  IMZ18_RS20955 (IMZ18_20955) ywnA 3956640..3957041 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45041.13 Da        Isoelectric Point: 4.7537

>NTDB_id=437314 IMZ18_RS20915 WP_014481175.1 3951039..3952172(+) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=437314 IMZ18_RS20915 WP_014481175.1 3951039..3952172(+) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422