Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   IMZ18_RS18855 Genome accession   NZ_CP063151
Coordinates   3542394..3543188 (+) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3537394..3548188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS18835 (IMZ18_18835) walR 3537636..3538343 (+) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -
  IMZ18_RS18840 (IMZ18_18840) walK 3538351..3540186 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  IMZ18_RS18845 (IMZ18_18845) walH 3540176..3541543 (+) 1368 WP_014481474.1 WalRK two-component regulatory system regulator WalH -
  IMZ18_RS18850 (IMZ18_18850) walI 3541530..3542372 (+) 843 WP_014481473.1 WalRK two-component regulatory system regulator WalI -
  IMZ18_RS18855 (IMZ18_18855) vicX 3542394..3543188 (+) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  IMZ18_RS18860 (IMZ18_18860) htrA 3543270..3544472 (+) 1203 WP_014481472.1 serine protease HtrC Regulator
  IMZ18_RS18865 (IMZ18_18865) - 3544493..3544625 (+) 133 Protein_3689 hypothetical protein -
  IMZ18_RS18870 (IMZ18_18870) - 3544653..3544805 (+) 153 Protein_3690 ATP-binding protein -
  IMZ18_RS18875 (IMZ18_18875) rocR 3544787..3546172 (-) 1386 WP_003244510.1 arginine utilization regulatory protein RocR -
  IMZ18_RS18880 (IMZ18_18880) - 3546399..3546683 (+) 285 WP_015715052.1 autorepressor SdpR family transcription factor -
  IMZ18_RS18885 (IMZ18_18885) - 3546683..3547318 (+) 636 WP_014481470.1 SdpI family protein -
  IMZ18_RS18890 (IMZ18_18890) - 3547646..3548056 (+) 411 WP_231560755.1 SdpA family antimicrobial peptide system protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=437304 IMZ18_RS18855 WP_003226939.1 3542394..3543188(+) (vicX) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=437304 IMZ18_RS18855 WP_003226939.1 3542394..3543188(+) (vicX) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTTGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTGGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGGAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAAAC
AGTGAAGTCGTTCGGCGGACTTGATGTTGAATCATTTGGCGTTTCCCACGATGCGGCCGAGCCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCATGATGTCGGCATGCTGCAAATGGGAAGATACCCGTGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53