Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   IMZ18_RS18175 Genome accession   NZ_CP063151
Coordinates   3420054..3420284 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3415054..3425284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS18165 (IMZ18_18165) spoVT 3415779..3416315 (-) 537 WP_003218365.1 stage V sporulation protein T -
  IMZ18_RS18170 (IMZ18_18170) mfd 3416451..3419984 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  IMZ18_RS18175 (IMZ18_18175) subA/fin 3420054..3420284 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  IMZ18_RS18180 (IMZ18_18180) pth 3420344..3420910 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  IMZ18_RS18185 (IMZ18_18185) rplYB 3421017..3421631 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  IMZ18_RS18190 (IMZ18_18190) prsS 3421716..3422669 (-) 954 WP_014478600.1 ribose-phosphate diphosphokinase -
  IMZ18_RS18195 (IMZ18_18195) glmU 3422692..3424062 (-) 1371 WP_014478599.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  IMZ18_RS18200 (IMZ18_18200) spoVG 3424255..3424548 (-) 294 WP_003218346.1 septation regulator SpoVG -
  IMZ18_RS18205 (IMZ18_18205) ridA 3424743..3425120 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=437296 IMZ18_RS18175 WP_003243417.1 3420054..3420284(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=437296 IMZ18_RS18175 WP_003243417.1 3420054..3420284(-) (subA/fin) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1