Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   IMZ18_RS16105 Genome accession   NZ_CP063151
Coordinates   3001338..3001772 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2996338..3006772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS16090 (IMZ18_16090) poxB 2996737..2998461 (-) 1725 WP_014478872.1 pyruvate oxidase -
  IMZ18_RS16095 (IMZ18_16095) mutT 2998528..2998977 (-) 450 WP_014478871.1 8-oxo-dGTP diphosphatase MutT -
  IMZ18_RS16100 (IMZ18_16100) topB 2999090..3001273 (-) 2184 WP_014478870.1 DNA topoisomerase III -
  IMZ18_RS16105 (IMZ18_16105) lrpC 3001338..3001772 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  IMZ18_RS16110 (IMZ18_16110) ydzA 3001957..3002247 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  IMZ18_RS16115 (IMZ18_16115) amj 3002292..3003101 (-) 810 WP_014478868.1 lipid II flippase Amj -
  IMZ18_RS16120 (IMZ18_16120) ydaG 3003607..3004029 (-) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  IMZ18_RS16125 (IMZ18_16125) ydaF 3004107..3004658 (-) 552 WP_014478866.1 GNAT family protein -
  IMZ18_RS16130 (IMZ18_16130) lyxE 3004746..3005248 (-) 503 Protein_3188 D-lyxose ketol-isomerase -
  IMZ18_RS16135 (IMZ18_16135) ydaD 3005264..3006124 (-) 861 WP_014478865.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=437280 IMZ18_RS16105 WP_003246585.1 3001338..3001772(-) (lrpC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=437280 IMZ18_RS16105 WP_003246585.1 3001338..3001772(-) (lrpC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1