Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IMZ18_RS14690 Genome accession   NZ_CP063151
Coordinates   2731907..2733037 (-) Length   376 a.a.
NCBI ID   WP_014479091.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2726907..2738037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS14645 (IMZ18_14645) yesK 2727167..2727469 (-) 303 Protein_2901 YesK-like family protein -
  IMZ18_RS14650 (IMZ18_14650) yesJ 2727492..2728034 (-) 543 WP_014479097.1 GNAT family N-acetyltransferase -
  IMZ18_RS14655 (IMZ18_14655) cotJC 2728159..2728728 (-) 570 WP_014479096.1 spore coat protein CotJC -
  IMZ18_RS14660 (IMZ18_14660) cotJB 2728743..2729006 (-) 264 WP_014479095.1 spore coat protein CotJB -
  IMZ18_RS14665 (IMZ18_14665) cotJA 2728990..2729238 (-) 249 WP_014479094.1 spore coat-associated protein CotJA -
  IMZ18_RS14670 (IMZ18_14670) yezE 2729415..2729999 (-) 585 WP_014479093.1 TetR/AcrR family transcriptional regulator -
  IMZ18_RS14675 (IMZ18_14675) - 2730114..2730731 (-) 618 WP_049832634.1 spore coat protein -
  IMZ18_RS14680 (IMZ18_14680) yeeI 2730865..2731584 (-) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  IMZ18_RS14685 (IMZ18_14685) phrH 2731744..2731917 (-) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  IMZ18_RS14690 (IMZ18_14690) rapC 2731907..2733037 (-) 1131 WP_014479091.1 response regulator aspartate phosphatase RapH Regulator
  IMZ18_RS14695 (IMZ18_14695) - 2733181..2734202 (-) 1022 Protein_2911 hypothetical protein -
  IMZ18_RS14700 (IMZ18_14700) yeeF 2734414..2736423 (+) 2010 WP_031600245.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  IMZ18_RS14705 (IMZ18_14705) - 2736428..2736901 (+) 474 WP_014479086.1 immunity protein YezG family protein -
  IMZ18_RS14710 (IMZ18_14710) - 2737500..2737697 (+) 198 WP_014479085.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44030.39 Da        Isoelectric Point: 5.9937

>NTDB_id=437277 IMZ18_RS14690 WP_014479091.1 2731907..2733037(-) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQKMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEKALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=437277 IMZ18_RS14690 WP_014479091.1 2731907..2733037(-) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAACCATCCCTTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAAAAGGCGCTGGAATTGGCCATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402