Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   IMZ18_RS14255 Genome accession   NZ_CP063151
Coordinates   2641029..2641745 (-) Length   238 a.a.
NCBI ID   WP_003233679.1    Uniprot ID   P39796
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2636029..2646745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS14240 (IMZ18_14240) - 2638735..2640087 (+) 1353 WP_014478984.1 IS1182 family transposase -
  IMZ18_RS14245 (IMZ18_14245) - 2640084..2640233 (-) 150 WP_193490599.1 hypothetical protein -
  IMZ18_RS14250 (IMZ18_14250) hypO 2640224..2640889 (-) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -
  IMZ18_RS14255 (IMZ18_14255) treR 2641029..2641745 (-) 717 WP_003233679.1 trehalose operon repressor Regulator
  IMZ18_RS14260 (IMZ18_14260) treC 2641766..2643451 (-) 1686 WP_014479164.1 alpha,alpha-phosphotrehalase -
  IMZ18_RS14265 (IMZ18_14265) treP 2643522..2644934 (-) 1413 WP_014479163.1 PTS system trehalose-specific EIIBC component -
  IMZ18_RS14270 (IMZ18_14270) - 2645123..2645302 (+) 180 Protein_2825 spore germination protein -
  IMZ18_RS14280 (IMZ18_14280) - 2645564..2645836 (+) 273 Protein_2826 spore gernimation protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27841.82 Da        Isoelectric Point: 7.1736

>NTDB_id=437276 IMZ18_RS14255 WP_003233679.1 2641029..2641745(-) (treR) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=437276 IMZ18_RS14255 WP_003233679.1 2641029..2641745(-) (treR) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2OGG

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.308

98.319

0.416