Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HGI45_RS06840 Genome accession   NZ_CP051292
Coordinates   1454497..1455810 (-) Length   437 a.a.
NCBI ID   WP_202136986.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-003     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1449497..1460810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI45_RS06810 (HGI45_06815) nadC 1449960..1450781 (-) 822 WP_202136981.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HGI45_RS06815 (HGI45_06820) nadA 1450781..1451791 (-) 1011 WP_202136982.1 quinolinate synthase NadA -
  HGI45_RS06820 (HGI45_06825) - 1451781..1452584 (-) 804 WP_202136983.1 phosphatidylserine decarboxylase -
  HGI45_RS06825 (HGI45_06830) - 1452581..1453084 (-) 504 WP_202136984.1 helix-turn-helix domain-containing protein -
  HGI45_RS06830 (HGI45_06835) - 1453097..1453591 (-) 495 WP_165515724.1 hypothetical protein -
  HGI45_RS06835 (HGI45_06840) mqnP 1453584..1454468 (-) 885 WP_202136985.1 menaquinone biosynthesis prenyltransferase MqnP -
  HGI45_RS06840 (HGI45_06845) comEC/comE3 1454497..1455810 (-) 1314 WP_202136986.1 ComEC/Rec2 family competence protein Machinery gene
  HGI45_RS06845 (HGI45_06850) - 1455807..1457273 (-) 1467 WP_202136987.1 replicative DNA helicase -
  HGI45_RS06850 (HGI45_06855) - 1457284..1458678 (-) 1395 WP_202136988.1 NAD(P)H-hydrate dehydratase -
  HGI45_RS06855 (HGI45_06860) crdS 1458681..1459883 (-) 1203 WP_202137590.1 copper-sensing histidine kinase CrdS -
  HGI45_RS06860 (HGI45_06865) crdR 1459849..1460490 (-) 642 WP_202136989.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50265.15 Da        Isoelectric Point: 9.8315

>NTDB_id=437273 HGI45_RS06840 WP_202136986.1 1454497..1455810(-) (comEC/comE3) [Helicobacter pylori strain ASHA-003]
MKDKTFQGAFELLSTPKEYLWCGVFLSLLLTLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESMKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSSALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDLGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGARLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILNMPLTIPTISISSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=437273 HGI45_RS06840 WP_202136986.1 1454497..1455810(-) (comEC/comE3) [Helicobacter pylori strain ASHA-003]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTAACACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTATTGCAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTATGAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCACTCATTCAAGCGCTTTAGCGGGCAATTTATACCGCGCATTGTTTATAGGGGATAGCTTG
AACAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATCTAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGCAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
TTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCCTAAGT
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCTTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATCCTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941