Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HGI45_RS04405 Genome accession   NZ_CP051292
Coordinates   958363..958653 (+) Length   96 a.a.
NCBI ID   WP_000736104.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-003     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 953363..963653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI45_RS04385 (HGI45_04380) - 953809..954750 (-) 942 WP_202136620.1 chemotaxis protein -
  HGI45_RS04390 (HGI45_04385) ligA 954823..956793 (+) 1971 WP_202136621.1 NAD-dependent DNA ligase LigA -
  HGI45_RS04395 (HGI45_04390) - 956948..957736 (+) 789 WP_202136622.1 integrase -
  HGI45_RS04400 (HGI45_04395) - 957887..958366 (+) 480 WP_202136624.1 hypothetical protein -
  HGI45_RS04405 (HGI45_04400) comB2 958363..958653 (+) 291 WP_000736104.1 TrbC/VirB2 family protein Machinery gene
  HGI45_RS04410 (HGI45_04405) comB3 958663..958926 (+) 264 WP_001177721.1 hypothetical protein Machinery gene
  HGI45_RS04415 (HGI45_04410) - 958938..959174 (+) 237 WP_202136625.1 hypothetical protein -
  HGI45_RS04420 (HGI45_04415) - 959174..960046 (+) 873 Protein_884 transporter -
  HGI45_RS04425 (HGI45_04420) - 960075..961352 (-) 1278 WP_001274352.1 RNA-guided endonuclease TnpB family protein -
  HGI45_RS04430 (HGI45_04425) - 961327..961980 (-) 654 WP_001042556.1 IS607-like element IS607 family transposase -
  HGI45_RS04435 (HGI45_04430) - 962116..962367 (-) 252 WP_079354583.1 hypothetical protein -
  HGI45_RS04440 (HGI45_04435) - 962415..962687 (-) 273 WP_001880357.1 type II toxin-antitoxin system mRNA interferase toxin, HP0892 family -
  HGI45_RS04445 (HGI45_04440) - 962701..962988 (-) 288 WP_001134114.1 type II toxin-antitoxin system antitoxin -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10958.29 Da        Isoelectric Point: 11.1589

>NTDB_id=437270 HGI45_RS04405 WP_000736104.1 958363..958653(+) (comB2) [Helicobacter pylori strain ASHA-003]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLQSPTGKGILMIIFIAIGIFVWKNLDRWKEILLTILGVVLGTLIF
FKAPALAQWFMTSVGN

Nucleotide


Download         Length: 291 bp        

>NTDB_id=437270 HGI45_RS04405 WP_000736104.1 958363..958653(+) (comB2) [Helicobacter pylori strain ASHA-003]
ATGAAAAAATTAAGACATTTTAGAAAGCTTATCGCCTTTTTAGGTTTTTCACCACTTTTATTACAAGCGGATATGACTAC
CTTTTTTAATAGCATTGAGCAACAACTCCAAAGCCCTACAGGTAAGGGCATTTTAATGATTATATTCATTGCTATTGGTA
TTTTTGTGTGGAAAAACTTAGATAGATGGAAAGAAATCTTATTAACTATTTTAGGAGTTGTTTTAGGAACGCTGATATTT
TTTAAAGCCCCAGCCTTAGCTCAATGGTTTATGACTAGTGTTGGTAACTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

59.77

90.625

0.542