Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LPV_RS14245 Genome accession   NC_018140
Coordinates   3192907..3193500 (+) Length   197 a.a.
NCBI ID   WP_011216607.1    Uniprot ID   Q5WT52
Organism   Legionella pneumophila subsp. pneumophila     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3187907..3198500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPV_RS14235 (LPV_3105) dnaX 3190856..3192526 (+) 1671 WP_014844825.1 DNA polymerase III subunit gamma/tau -
  LPV_RS14240 (LPV_3106) - 3192560..3192898 (+) 339 WP_011216606.1 YbaB/EbfC family nucleoid-associated protein -
  LPV_RS14245 (LPV_3107) recR 3192907..3193500 (+) 594 WP_011216607.1 recombination mediator RecR Machinery gene
  LPV_RS14250 (LPV_3108) - 3193493..3194353 (+) 861 WP_014844826.1 DUF547 domain-containing protein -
  LPV_RS14255 (LPV_3109) - 3194350..3196347 (+) 1998 WP_014844827.1 sulfatase-like hydrolase/transferase -
  LPV_RS14260 (LPV_3110) - 3196604..3198073 (-) 1470 WP_014844828.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21705.01 Da        Isoelectric Point: 6.6782

>NTDB_id=43726 LPV_RS14245 WP_011216607.1 3192907..3193500(+) (recR) [Legionella pneumophila subsp. pneumophila]
MDALSRLVEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMKHISHCQQCNNYTEQTLCTLCQNPNRDSTLLC
VVESPADVSAIEQSNSFQGKYFVLMGKISPLDGLGPDDIGLPKLKELIIREKIQEVILALSPSVESQTTIHFIHQLLKDE
TVNISQLAHGIPSGGELEFLDGNTISSALKNRAVINV

Nucleotide


Download         Length: 594 bp        

>NTDB_id=43726 LPV_RS14245 WP_011216607.1 3192907..3193500(+) (recR) [Legionella pneumophila subsp. pneumophila]
ATGGATGCTCTAAGCCGCTTGGTAGAGGCGCTTCGCTGTCTTCCCGGTGTGGGACCAAAATCAGCACAAAGGATGGTGTT
CCATTTATTGCAGCACCAAAGACAGCGAGGTTTACACCTTGCCTCCTGTTTGGAACAGGCAATGAAGCACATTAGTCATT
GTCAGCAGTGTAATAATTACACCGAACAAACTCTGTGTACTCTTTGCCAAAACCCCAATCGAGATTCAACATTACTTTGC
GTGGTAGAGAGTCCAGCAGATGTTTCTGCCATAGAACAAAGCAATTCCTTTCAAGGTAAATATTTTGTCCTTATGGGAAA
AATTTCTCCTCTTGATGGCTTGGGACCTGATGACATAGGGCTACCGAAACTTAAGGAGTTAATTATTAGGGAAAAAATTC
AGGAAGTTATTCTTGCATTAAGCCCCAGTGTTGAAAGCCAGACCACAATTCATTTTATTCATCAGTTGCTAAAGGATGAA
ACCGTCAATATCAGTCAGTTAGCACATGGAATACCATCAGGTGGTGAATTAGAATTTTTAGATGGGAATACTATAAGCAG
TGCCCTTAAGAACAGAGCAGTGATTAATGTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-168)

RecR protein (RecR_ZnF)

(38-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WT52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.513

98.985

0.401
  recR Bacillus subtilis subsp. subtilis str. 168

39.267

96.954

0.381

Multiple sequence alignment