Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IMZ18_RS11560 Genome accession   NZ_CP063151
Coordinates   2138753..2139889 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2133753..2144889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS11520 (IMZ18_11520) xre 2134097..2134438 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  IMZ18_RS11525 (IMZ18_11525) xkdA 2134601..2135197 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  IMZ18_RS11530 (IMZ18_11530) xpdC 2135241..2136077 (-) 837 WP_003245071.1 manganese catalase family protein -
  IMZ18_RS11535 (IMZ18_11535) pghB 2136154..2136756 (-) 603 WP_014479547.1 poly-gamma-glutamate hydrolase family protein -
  IMZ18_RS11540 (IMZ18_11540) yjqA 2136861..2137238 (+) 378 WP_014479546.1 PH domain-containing protein -
  IMZ18_RS11545 (IMZ18_11545) xlyB 2137278..2138231 (-) 954 WP_014479545.1 N-acetylmuramoyl-L-alanine amidase -
  IMZ18_RS11550 (IMZ18_11550) yjpA 2138352..2138598 (+) 247 Protein_2295 YciI family protein -
  IMZ18_RS11555 (IMZ18_11555) phrA 2138629..2138763 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  IMZ18_RS11560 (IMZ18_11560) rapC 2138753..2139889 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  IMZ18_RS11565 (IMZ18_11565) - 2140034..2140207 (-) 174 Protein_2298 ATPase -
  IMZ18_RS11570 (IMZ18_11570) - 2140302..2141452 (+) 1151 WP_087614160.1 IS3 family transposase -
  IMZ18_RS11575 (IMZ18_11575) yjoB 2141494..2142594 (-) 1101 Protein_2300 ATPase YjoB -
  IMZ18_RS11580 (IMZ18_11580) bstD 2142743..2143207 (+) 465 WP_014479541.1 DinB family protein -
  IMZ18_RS11585 (IMZ18_11585) yjnA 2143426..2144190 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=437252 IMZ18_RS11560 WP_015252291.1 2138753..2139889(-) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=437252 IMZ18_RS11560 WP_015252291.1 2138753..2139889(-) (rapC) [Bacillus subtilis subsp. subtilis strain CMIN-4]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AGGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418