Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HGI44_RS06815 Genome accession   NZ_CP051291
Coordinates   1403346..1404659 (-) Length   437 a.a.
NCBI ID   WP_202136200.1    Uniprot ID   -
Organism   Helicobacter pylori strain ASHA-002     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398346..1409659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGI44_RS06785 (HGI44_06775) nadC 1398809..1399630 (-) 822 WP_202136197.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HGI44_RS06790 (HGI44_06780) nadA 1399630..1400640 (-) 1011 WP_202136198.1 quinolinate synthase NadA -
  HGI44_RS06795 (HGI44_06785) - 1400627..1401433 (-) 807 WP_202136199.1 phosphatidylserine decarboxylase -
  HGI44_RS06800 (HGI44_06790) - 1401427..1401933 (-) 507 WP_101021244.1 helix-turn-helix domain-containing protein -
  HGI44_RS06805 (HGI44_06795) - 1401946..1402440 (-) 495 WP_012443434.1 hypothetical protein -
  HGI44_RS06810 (HGI44_06800) mqnP 1402433..1403317 (-) 885 WP_000913954.1 menaquinone biosynthesis prenyltransferase MqnP -
  HGI44_RS06815 (HGI44_06805) comEC/comE3 1403346..1404659 (-) 1314 WP_202136200.1 ComEC/Rec2 family competence protein Machinery gene
  HGI44_RS06820 (HGI44_06810) - 1404656..1406122 (-) 1467 WP_202136201.1 replicative DNA helicase -
  HGI44_RS06825 (HGI44_06815) - 1406133..1407527 (-) 1395 WP_202136202.1 NAD(P)H-hydrate dehydratase -
  HGI44_RS06830 (HGI44_06820) crdS 1407530..1408732 (-) 1203 WP_202136559.1 copper-sensing histidine kinase CrdS -
  HGI44_RS06835 (HGI44_06825) crdR 1408698..1409339 (-) 642 WP_202136203.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50208.21 Da        Isoelectric Point: 9.8315

>NTDB_id=437251 HGI44_RS06815 WP_202136200.1 1403346..1404659(-) (comEC/comE3) [Helicobacter pylori strain ASHA-002]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDPILSMPLTIPTISISSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=437251 HGI44_RS06815 WP_202136200.1 1403346..1404659(-) (comEC/comE3) [Helicobacter pylori strain ASHA-002]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGCTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGTTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTCCAAACTTATTCTTTTTCTTTAACACGGAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCACTCATTCAAACGCTTTAGTGGGCAATTTATACCGCGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGATTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCCCA
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTGTGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTCTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954