Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   IMZ18_RS10605 Genome accession   NZ_CP063151
Coordinates   1964744..1965319 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis subsp. subtilis strain CMIN-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1959744..1970319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ18_RS10585 (IMZ18_10585) moeB 1960642..1961661 (-) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -
  IMZ18_RS10590 (IMZ18_10590) mobA 1961712..1962311 (-) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  IMZ18_RS10595 (IMZ18_10595) cse15 1962448..1963413 (+) 966 WP_014479669.1 spore protein Cse15 -
  IMZ18_RS10600 (IMZ18_10600) - 1963526..1964676 (+) 1151 WP_087614160.1 IS3 family transposase -
  IMZ18_RS10605 (IMZ18_10605) rok 1964744..1965319 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  IMZ18_RS10610 (IMZ18_10610) ykuV 1965785..1966231 (-) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  IMZ18_RS10615 (IMZ18_10615) ahpA 1966301..1966843 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  IMZ18_RS10620 (IMZ18_10620) mscT 1967080..1967883 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  IMZ18_RS10625 (IMZ18_10625) ykuS 1967920..1968165 (-) 246 WP_003232382.1 YkuS family protein -
  IMZ18_RS10630 (IMZ18_10630) dapI 1968227..1969351 (-) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  IMZ18_RS10635 (IMZ18_10635) dapD 1969421..1970131 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=437244 IMZ18_RS10605 WP_003232378.1 1964744..1965319(-) (rok) [Bacillus subtilis subsp. subtilis strain CMIN-4]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=437244 IMZ18_RS10605 WP_003232378.1 1964744..1965319(-) (rok) [Bacillus subtilis subsp. subtilis strain CMIN-4]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1