Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LPV_RS13420 Genome accession   NC_018140
Coordinates   3010719..3011510 (-) Length   263 a.a.
NCBI ID   WP_014844714.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005719..3016510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPV_RS13410 (LPV_2920) legS1 3006864..3008021 (-) 1158 WP_014844712.1 Dot/Icm T4SS effector LegS1 -
  LPV_RS13415 (LPV_2923) dacB 3008834..3010627 (-) 1794 WP_014844713.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  LPV_RS13420 (LPV_2924) spo0J 3010719..3011510 (-) 792 WP_014844714.1 ParB/RepB/Spo0J family partition protein Regulator
  LPV_RS13425 (LPV_2926) ceg33 3011627..3012130 (-) 504 WP_014844715.1 Dot/Icm T4SS effector Ceg33 -
  LPV_RS13430 (LPV_2927) - 3012304..3013053 (-) 750 WP_014844716.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LPV_RS13435 (LPV_2928) rsmB 3013050..3014330 (-) 1281 WP_014844717.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LPV_RS13440 (LPV_2929) fmt 3014327..3015271 (-) 945 WP_014844718.1 methionyl-tRNA formyltransferase -
  LPV_RS13445 (LPV_2930) def 3015268..3015780 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30113.25 Da        Isoelectric Point: 5.7320

>NTDB_id=43720 LPV_RS13420 WP_014844714.1 3010719..3011510(-) (spo0J) [Legionella pneumophila subsp. pneumophila]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQIIGEEWSVRYLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=43720 LPV_RS13420 WP_014844714.1 3010719..3011510(-) (spo0J) [Legionella pneumophila subsp. pneumophila]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
AGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCCTTGGTGGTAAGACCTATAGCAAAAGAGC
GATATGAAATTATTGCGGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATCGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTATTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAGCAAGAAATGTTTGCTCACCAGATTATTGGAGAGGAATGGTCTGT
CAGATACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.692

98.859

0.373

Multiple sequence alignment