Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   IMY14_RS21470 Genome accession   NZ_CP063150
Coordinates   4143332..4144126 (-) Length   264 a.a.
NCBI ID   WP_015483958.1    Uniprot ID   -
Organism   Bacillus subtilis strain s-16     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4138332..4149126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS21445 rocD 4138605..4139810 (-) 1206 WP_047183487.1 ornithine aminotransferase -
  IMY14_RS21450 rocR 4140051..4141436 (+) 1386 WP_047183488.1 arginine utilization regulatory protein RocR -
  IMY14_RS21455 - 4141418..4141780 (-) 363 Protein_4215 sensor histidine kinase -
  IMY14_RS21460 - 4141903..4142028 (-) 126 Protein_4216 hypothetical protein -
  IMY14_RS21465 htrA 4142048..4143250 (-) 1203 WP_021481077.1 serine protease HtrC Regulator
  IMY14_RS21470 vicX 4143332..4144126 (-) 795 WP_015483958.1 MBL fold metallo-hydrolase Regulator
  IMY14_RS21475 walI 4144148..4144990 (-) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  IMY14_RS21480 walH 4144977..4146344 (-) 1368 WP_047183604.1 WalRK two-component regulatory system regulator WalH -
  IMY14_RS21485 walK 4146334..4148169 (-) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  IMY14_RS21490 walR 4148177..4148884 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29282.29 Da        Isoelectric Point: 6.0287

>NTDB_id=437172 IMY14_RS21470 WP_015483958.1 4143332..4144126(-) (vicX) [Bacillus subtilis strain s-16]
MSLQFSVLASGSTGNAFYLETENHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=437172 IMY14_RS21470 WP_015483958.1 4143332..4144126(-) (vicX) [Bacillus subtilis strain s-16]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGAATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGAATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGCATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTTTCAAATGAAGATGCTGCTTTGGCAATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAATAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACAGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53