Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HEP75_RS15010 Genome accession   NZ_CP051261
Coordinates   3597783..3599168 (-) Length   461 a.a.
NCBI ID   WP_185824060.1    Uniprot ID   -
Organism   Xanthomonas sp. SI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3592783..3604168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP75_RS14990 (HEP75_02946) - 3593612..3594916 (+) 1305 WP_185824057.1 histidine-type phosphatase -
  HEP75_RS14995 (HEP75_02947) - 3595048..3596352 (+) 1305 WP_185824058.1 jacalin-like lectin -
  HEP75_RS15000 (HEP75_02948) - 3596513..3597124 (-) 612 WP_185824059.1 hypothetical protein -
  HEP75_RS15005 (HEP75_02949) - 3597313..3597699 (-) 387 WP_185813489.1 DUF805 domain-containing protein -
  HEP75_RS15010 (HEP75_02950) radA 3597783..3599168 (-) 1386 WP_185824060.1 DNA repair protein RadA Machinery gene
  HEP75_RS15015 (HEP75_02951) - 3599469..3600167 (-) 699 WP_221899269.1 hypothetical protein -
  HEP75_RS15020 (HEP75_02952) - 3600359..3602248 (-) 1890 WP_185824062.1 tetratricopeptide repeat protein -
  HEP75_RS15025 (HEP75_02953) cyoD 3602441..3602776 (-) 336 WP_185813493.1 cytochrome o ubiquinol oxidase subunit IV -
  HEP75_RS15030 (HEP75_02954) cyoC 3602776..3603399 (-) 624 WP_185824063.1 cytochrome o ubiquinol oxidase subunit III -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48441.63 Da        Isoelectric Point: 7.0285

>NTDB_id=437141 HEP75_RS15010 WP_185824060.1 3597783..3599168(-) (radA) [Xanthomonas sp. SI]
MAKAKTAYVCGDCGAEYTKWQGQCTECGAWNSLSEIVLESASAAKAPAAARRSGWAGKTEAPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMASTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALAETGI
EQILQQASAAQPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGSSTNQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGILVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDKPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGVVKGMEVIAVERLSQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=437141 HEP75_RS15010 WP_185824060.1 3597783..3599168(-) (radA) [Xanthomonas sp. SI]
ATGGCAAAAGCGAAAACGGCCTATGTGTGCGGCGACTGCGGCGCCGAGTACACCAAATGGCAAGGCCAGTGCACCGAGTG
CGGGGCGTGGAATTCGCTGAGCGAGATCGTGCTGGAAAGCGCGTCGGCGGCGAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGACCGAGGCGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAGTTCGACCGGGTGCTTGGCGGCGGCCTGGTCGAAGGCGCGGTGGTGCTGATCGGCGGCGACCCGGGCAT
CGGCAAGTCGACCCTGCTGCTGCAGGCGCTGGCCAAGATGGCCAGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTCGCCCAGGTCGCCGGCCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAACAGATCTTACAGCAGGCCAGCGCGGCCCAGCCCAAGCTGATCGTGGCCGACTCGGTGCAGACCCTGTGGACCGAATC
GTTGACCGCCGCGCCCGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTATGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTGACCAAGGAAGGCGGCATCGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGCTGTATTTCGAGGGCGAGAGCGGCAGCCGTTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGACTGAAGGAAGTGTCCAATCCGTCGGCGATCTTCCTGTCCGGCAGCAGCA
CCAACCAGCCCGGCAGCTGCGTGATGGTGACGCGCGAAGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGGGTGGCGGTGGGCCTGGAGCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCA
TCGGCACGGCGGCATCCTGGTCGGCGACCAGGACGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGATCTGCCGGTGCTGTTGGCGGTGCTGTCCTCGCTGCGCGACAAGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAACGGCGAGGACCGGCTGCGCGAAGCGGCCACGCACGGTTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCGTGGTCAAGGGCATGGAAGTGATCGCGGTGGAGCGCCTGTCGC
AGGCGCTGGAGGCGGCGAGCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(88-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.484
  radA Streptococcus mitis SK321

44.662

99.566

0.445
  radA Streptococcus pneumoniae D39

44.201

99.132

0.438
  radA Streptococcus pneumoniae TIGR4

44.201

99.132

0.438
  radA Streptococcus mitis NCTC 12261

44.201

99.132

0.438
  radA Streptococcus pneumoniae R6

44.201

99.132

0.438
  radA Streptococcus pneumoniae Rx1

44.201

99.132

0.438