Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SSON53G_RS05180 Genome accession   NC_016822
Coordinates   1040474..1041103 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei 53G     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1035474..1046103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSON53G_RS05155 (SSON53_05195) - 1035877..1037637 (-) 1761 WP_000156526.1 Lon protease family protein -
  SSON53G_RS05160 (SSON53_05200) matP 1037823..1038275 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  SSON53G_RS05165 (SSON53_05205) ompA 1038351..1039391 (-) 1041 WP_000750416.1 porin OmpA -
  SSON53G_RS05175 (SSON53_05210) sulA 1039746..1040255 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  SSON53G_RS05180 (SSON53_05215) sxy/tfoX 1040474..1041103 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SSON53G_RS05185 (SSON53_05220) yccS 1041066..1043228 (-) 2163 WP_000875023.1 YccS family putative transporter -
  SSON53G_RS05190 (SSON53_05225) - 1043238..1043684 (-) 447 WP_001261235.1 YccF domain-containing protein -
  SSON53G_RS05195 (SSON53_05230) helD 1043807..1045861 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=43713 SSON53G_RS05180 WP_000839153.1 1040474..1041103(+) (sxy/tfoX) [Shigella sonnei 53G]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=43713 SSON53G_RS05180 WP_000839153.1 1040474..1041103(+) (sxy/tfoX) [Shigella sonnei 53G]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment