Detailed information NTG0437106

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: IMY14_RS11540
• Genome accession: NZ_CP063150
• Coordinates: 2253404..2254540 (+)
• Length: 378 a.a.
• NCBI ID: WP_068947494.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain s-16
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2248404..2259540

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMY14_RS11515	-	2250335..2251153 (+)	819	Protein_2248	hypothetical protein	-
IMY14_RS11520	-	2251133..2251369 (+)	237	WP_174616783.1	hypothetical protein	-
IMY14_RS11525	blyA	2251393..2252496 (+)	1104	WP_169024453.1	N-acetylmuramoyl-L-alanine amidase BlyA	-
IMY14_RS11530	-	2252612..2253004 (+)	393	WP_010328137.1	hypothetical protein	-
IMY14_RS11535	-	2253025..2253276 (+)	252	WP_042976275.1	phage holin	-
IMY14_RS11540	rapC	2253404..2254540 (+)	1137	WP_068947494.1	Rap family tetratricopeptide repeat protein	Regulator
IMY14_RS11545	-	2254530..2254706 (+)	177	WP_042976278.1	hypothetical protein	-
IMY14_RS11550	uvrX	2254748..2255998 (-)	1251	WP_128751229.1	UV damage repair protein UvrX	-
IMY14_RS11555	yolD	2255991..2256323 (-)	333	WP_121590876.1	YolD-like family protein	-
IMY14_RS11560	-	2256491..2257489 (+)	999	WP_041352977.1	hypothetical protein	-
IMY14_RS11565	-	2257650..2257733 (+)	84	WP_082786706.1	putative holin-like toxin	-
IMY14_RS11570	-	2258058..2258654 (-)	597	WP_072692679.1	SMI1/KNR4 family protein	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 44847.08 Da
• Isoelectric Point: 5.0660

>NTDB_id=437106 IMY14_RS11540 WP_068947494.1 2253404..2254540(+) (rapC) [Bacillus subtilis strain s-16]
MEQMISSSKVGVKINEWYKYIRLFSVPDSEILKAEVEEEIRHMKEDQDLLLYYSLMCFRHQLMLDYLEPKTLNEERPKIS
DLLEKIESSQTDLKGILEYYFNFFRGMYEFEQYEYLNAISFYKQAERKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIDSYKAHENYTVRVIQCSFVIGLNYLDMDYPEKAIPHFKDALDKAREIDMSRLIGSSLYNLGLCSFAEEAYEKAS
EYFKEGIRVYQDNGYEHSNRILDILLMLTKTTFKMRNHSEGISWCAHGLSLSKNLNDEIMAKMFEFIHALYVDNDNEKLN
SILNYLELKSMLSDVEDLASDAAKYYNEKEDHKVAVAYYEKVLYARKQIQRGDCLYET

Nucleotide

• Length: 1137 bp

>NTDB_id=437106 IMY14_RS11540 WP_068947494.1 2253404..2254540(+) (rapC) [Bacillus subtilis strain s-16]
TTGGAGCAGATGATCTCTTCTTCTAAAGTTGGAGTGAAAATAAATGAGTGGTATAAATACATAAGATTATTTAGTGTCCC
AGATTCGGAAATATTGAAAGCTGAGGTCGAGGAAGAAATAAGGCATATGAAAGAAGATCAAGATTTATTGCTGTACTATT
CTCTCATGTGTTTTCGCCATCAGCTGATGCTGGACTACCTTGAACCAAAAACATTGAACGAAGAACGACCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGTAGTCAAACTGATTTGAAAGGGATTCTTGAATATTATTTTAACTTTTTCCGGGGAAT
GTATGAATTTGAACAATACGAATATCTTAATGCCATAAGCTTCTATAAGCAAGCCGAGAGAAAATTATCACTTGTTGCAG
ATGAAATTGAAAGAGCTGAATTCCACTATAAAGTTGCAGAAATTTATTATCATATGAAGCAAACACATATGTCGATGCAC
CACATTGTTCAAGCAATCGATAGTTATAAAGCACATGAAAACTACACTGTAAGAGTTATTCAATGCTCATTTGTTATCGG
ACTGAACTATTTGGATATGGACTACCCTGAAAAAGCGATCCCTCATTTTAAAGATGCTCTAGATAAAGCAAGAGAAATCG
ATATGTCACGATTAATCGGATCATCTCTTTACAATCTCGGCTTATGTTCCTTTGCTGAGGAAGCTTATGAAAAGGCATCT
GAGTACTTCAAGGAGGGCATTAGAGTATATCAGGATAATGGGTATGAACATTCAAATCGCATATTAGATATCTTACTTAT
GTTGACAAAAACCACTTTTAAAATGAGAAATCACTCCGAGGGAATTTCTTGGTGTGCACACGGTCTGTCTTTGTCCAAAA
ATTTAAACGATGAGATTATGGCAAAAATGTTTGAATTCATTCATGCCTTATATGTAGATAATGACAATGAAAAATTAAAT
TCAATTCTAAATTATTTAGAATTAAAGTCAATGCTTTCAGACGTGGAGGATTTAGCATCAGATGCAGCGAAGTATTACAA
TGAAAAAGAAGACCATAAAGTGGCTGTTGCTTATTATGAAAAAGTGCTTTATGCCCGTAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAACTTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_8) (343-367)

• Tetratricopeptide repeat (TPR_8) (222-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	48.031	100	0.484
rapF	Bacillus subtilis subsp. subtilis str. 168	45.789	100	0.46