Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IMY14_RS09160 Genome accession   NZ_CP063150
Coordinates   1769450..1769881 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain s-16     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1764450..1774881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS09140 spoVS 1765011..1765271 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  IMY14_RS09145 tdh 1765537..1766580 (+) 1044 WP_015483237.1 L-threonine 3-dehydrogenase -
  IMY14_RS09150 kbl 1766593..1767771 (+) 1179 WP_047182626.1 glycine C-acetyltransferase -
  IMY14_RS09155 miaB 1767919..1769448 (+) 1530 WP_015483238.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IMY14_RS09160 ymcA 1769450..1769881 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  IMY14_RS09165 cotE 1770143..1770688 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  IMY14_RS09170 hexA 1770821..1773397 (+) 2577 WP_015483239.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=437098 IMY14_RS09160 WP_003231834.1 1769450..1769881(+) (ymcA) [Bacillus subtilis strain s-16]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=437098 IMY14_RS09160 WP_003231834.1 1769450..1769881(+) (ymcA) [Bacillus subtilis strain s-16]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1