Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PANA5342_RS40685 Genome accession   NC_016816
Coordinates   3886977..3888359 (-) Length   460 a.a.
NCBI ID   WP_015701005.1    Uniprot ID   -
Organism   Pantoea ananatis LMG 5342     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3881977..3893359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PANA5342_RS40660 (PANA5342_3692) - 3882414..3883103 (-) 690 WP_014606640.1 molecular chaperone -
  PANA5342_RS40665 (PANA5342_3693) - 3883143..3883697 (-) 555 WP_014606641.1 fimbrial protein -
  PANA5342_RS40670 (PANA5342_3694) - 3883940..3884389 (-) 450 WP_014606642.1 hypothetical protein -
  PANA5342_RS40675 (PANA5342_3695) - 3884386..3885318 (-) 933 WP_015701004.1 winged helix-turn-helix domain-containing protein -
  PANA5342_RS40680 (PANA5342_3696) nadR 3885646..3886884 (-) 1239 WP_014595284.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  PANA5342_RS40685 (PANA5342_3697) radA 3886977..3888359 (-) 1383 WP_015701005.1 DNA repair protein RadA Machinery gene
  PANA5342_RS40690 (PANA5342_3698) serB 3888373..3889350 (-) 978 WP_014595282.1 phosphoserine phosphatase -
  PANA5342_RS40695 (PANA5342_3699) - 3889458..3890126 (+) 669 WP_013024512.1 YtjB family periplasmic protein -
  PANA5342_RS40700 (PANA5342_3700) yjjG 3890255..3890935 (-) 681 WP_014606646.1 pyrimidine 5'-nucleotidase -
  PANA5342_RS40705 (PANA5342_3701) rimI 3890955..3891395 (-) 441 WP_041456023.1 ribosomal protein S18-alanine N-acetyltransferase -
  PANA5342_RS40710 - 3891367..3891777 (-) 411 WP_041456024.1 DNA polymerase III subunit psi -
  PANA5342_RS40715 (PANA5342_3702) rsmC 3891883..3892914 (+) 1032 WP_014606648.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49504.18 Da        Isoelectric Point: 7.6493

>NTDB_id=43707 PANA5342_RS40685 WP_015701005.1 3886977..3888359(-) (radA) [Pantoea ananatis LMG 5342]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQVMCRLAQNMKTLYVTGEESLQQVAMRAHRLGLPTENLNMLSETSIE
QICLIAEQEAPQIMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSYKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIEGMRVYSVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=43707 PANA5342_RS40685 WP_015701005.1 3886977..3888359(-) (radA) [Pantoea ananatis LMG 5342]
TTGGCCAAAGCGGCAAAACGCGCATTTGTTTGTAACGAGTGTGGCGCAGATTATCCGCGCTGGCAGGGGCAATGCAGCGC
CTGTCACGCCTGGAACACCATTACCGAGGTACGGATTGCCGCCTCACCCGCTGCAGCGCGCAATGAGCGCCTCAGCGGTT
ATGCGGGCAGTGCCGGGACCAGTCGGGTGCAAAAGCTGTCCGAAATCAGCCTGGAAGCCTTGCCCCGTTTCTCGACCAGC
TTTAAAGAATTTGACCGTGTGCTGGGCGGTGGCGTGGTGCCCGGCAGTGCCATTCTGATTGGTGGTAATCCCGGGGCCGG
TAAATCAACTTTGTTGCTGCAGGTCATGTGCCGCTTAGCGCAGAACATGAAAACGCTGTATGTCACCGGCGAAGAATCTT
TACAGCAGGTGGCAATGCGTGCCCATCGGCTGGGTTTGCCGACTGAAAACCTGAACATGCTGTCGGAAACCAGCATCGAA
CAGATCTGCCTGATCGCCGAGCAGGAAGCGCCGCAAATCATGGTCATCGACTCCATCCAGGTGATGCACATGGCCGATAT
CCAGTCTTCACCCGGCAGCGTCGCCCAGGTGCGCGAAACCGCCGCTTATCTGACGCGCTTTGCCAAAACCCGCGGCGTGG
CGATTATCATGGTGGGCCATGTCACCAAAGACGGATCGCTGGCCGGGCCGAAGGTCCTTGAGCACTGTATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCTTGCGCAGCTATAAAAACCGTTTTGGTGCCGTGAATGAACT
GGGGGTTTTTGCCATGACGGAGCAGGGCATGCGTGAGGTGAGCAATCCTTCCGCCATTTTCCTGTCGCGCGGTGAAGAGA
TTACGTCGGGCAGTTCGGTCATGGTGCTGTGGGAAGGAACCCGGCCATTGCTGGTCGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGGAATCCCCGTCGTGTTGCCGTCGGGCTTGAACAAAACCGCCTGGCGATTCTGCTGGCGGTACTGCATCG
TCACGGTGGATTGCAAATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTGAAAGTCACAGAAACCAGCGCCG
ACCTGGCGCTGATGCTGTCAATGGTTTCCAGCCTGCGCGATCGCCCCTTGCCGCAGGATCTGGTTATCTTTGGCGAAGTC
GGGCTGGCCGGCGAAATTCGCCCGGTGCCCAGCGGCCAGGAACGGATTTCAGAAGCGGCTAAACATGGCTTCAAACGGGC
GATTGTGCCTGCCGGTAACGCGCCGAAAAAGCCGATTGAGGGCATGCGCGTCTATAGCGTGAAAAAGTTGGCGGATGCGC
TGGCGATTCTCGATGACCTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.807

100

0.489
  radA Streptococcus mitis NCTC 12261

43.516

98.913

0.43
  radA Streptococcus mitis SK321

43.297

98.913

0.428
  radA Streptococcus pneumoniae TIGR4

44.78

93.696

0.42
  radA Streptococcus pneumoniae D39

44.78

93.696

0.42
  radA Streptococcus pneumoniae Rx1

44.78

93.696

0.42
  radA Streptococcus pneumoniae R6

44.78

93.696

0.42

Multiple sequence alignment