Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   IMY14_RS02380 Genome accession   NZ_CP063150
Coordinates   466555..466989 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain s-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 461555..471989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS02350 ydaD 462201..463061 (+) 861 WP_042977133.1 SDR family oxidoreductase -
  IMY14_RS02355 lyxE 463077..463580 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  IMY14_RS02360 ydaF 463669..464220 (+) 552 WP_047182111.1 GNAT family protein -
  IMY14_RS02365 ydaG 464298..464720 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  IMY14_RS02370 amj 465226..466035 (+) 810 WP_015715258.1 lipid II flippase Amj -
  IMY14_RS02375 ydzA 466080..466370 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  IMY14_RS02380 lrpC 466555..466989 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  IMY14_RS02385 topB 467054..469237 (+) 2184 WP_047182112.1 DNA topoisomerase III -
  IMY14_RS02390 ephJ 469439..470527 (+) 1089 WP_047182113.1 hypothetical protein -
  IMY14_RS02395 epsK 470508..471359 (+) 852 WP_047182114.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=437049 IMY14_RS02380 WP_003246585.1 466555..466989(+) (lrpC) [Bacillus subtilis strain s-16]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=437049 IMY14_RS02380 WP_003246585.1 466555..466989(+) (lrpC) [Bacillus subtilis strain s-16]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAACTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCTGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1