Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HF527_RS15160 Genome accession   NZ_CP051219
Coordinates   3104960..3105589 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SFE8     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3099960..3110589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF527_RS15145 (HF527_15145) helD 3100202..3102256 (-) 2055 WP_000420536.1 DNA helicase IV -
  HF527_RS15150 (HF527_15150) yccF 3102379..3102825 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HF527_RS15155 (HF527_15155) yccS 3102835..3104997 (+) 2163 WP_000875019.1 YccS family putative transporter -
  HF527_RS15160 (HF527_15160) sxy/tfoX 3104960..3105589 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HF527_RS15165 (HF527_15165) sulA 3105808..3106317 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HF527_RS15170 (HF527_15170) ompA 3106674..3107726 (+) 1053 WP_000750419.1 porin OmpA -
  HF527_RS15175 (HF527_15175) matP 3107801..3108253 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HF527_RS15180 (HF527_15180) ycbZ 3108439..3110199 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=437042 HF527_RS15160 WP_000839153.1 3104960..3105589(-) (sxy/tfoX) [Escherichia coli strain SFE8]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=437042 HF527_RS15160 WP_000839153.1 3104960..3105589(-) (sxy/tfoX) [Escherichia coli strain SFE8]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1