Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   INP89_RS08695 Genome accession   NZ_CP063127
Coordinates   1747396..1748010 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M1C112_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742396..1753010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP89_RS08670 (INP89_08665) - 1742814..1743332 (-) 519 WP_005656314.1 isoprenylcysteine carboxyl methyltransferase family protein -
  INP89_RS08675 (INP89_08670) aspS 1743551..1745317 (+) 1767 WP_012054956.1 aspartate--tRNA ligase -
  INP89_RS08680 (INP89_08675) nudB 1745339..1745815 (+) 477 WP_005656312.1 dihydroneopterin triphosphate diphosphatase -
  INP89_RS08685 (INP89_08680) - 1745975..1746715 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INP89_RS08690 (INP89_08685) ruvC 1746762..1747334 (+) 573 WP_005628536.1 crossover junction endodeoxyribonuclease RuvC -
  INP89_RS08695 (INP89_08690) ruvA 1747396..1748010 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  INP89_RS08700 (INP89_08695) ruvB 1748018..1749025 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INP89_RS08705 (INP89_08700) - 1749077..1749364 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  INP89_RS08710 (INP89_08705) xerD 1749537..1750430 (-) 894 WP_005666666.1 site-specific tyrosine recombinase XerD -
  INP89_RS08715 (INP89_08710) - 1750461..1751627 (-) 1167 WP_042601821.1 3-phenylpropionate MFS transporter -
  INP89_RS08720 (INP89_08715) proC 1751627..1752442 (-) 816 WP_012054953.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=437019 INP89_RS08695 WP_005659994.1 1747396..1748010(+) (ruvA) [Haemophilus influenzae strain M1C112_1]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=437019 INP89_RS08695 WP_005659994.1 1747396..1748010(+) (ruvA) [Haemophilus influenzae strain M1C112_1]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTTGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373