Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   INP89_RS08060 Genome accession   NZ_CP063127
Coordinates   1628366..1628968 (-) Length   200 a.a.
NCBI ID   WP_197541618.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M1C112_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1623366..1633968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP89_RS08040 (INP89_08035) - 1623730..1625400 (+) 1671 WP_012055037.1 fructose-specific PTS transporter subunit EIIC -
  INP89_RS08050 (INP89_08045) secG 1625945..1626286 (-) 342 WP_012055036.1 preprotein translocase subunit SecG -
  INP89_RS08055 (INP89_08050) - 1626395..1628350 (-) 1956 WP_197541617.1 DNA topoisomerase III -
  INP89_RS08060 (INP89_08055) recR 1628366..1628968 (-) 603 WP_197541618.1 recombination mediator RecR Machinery gene
  INP89_RS08065 (INP89_08060) - 1629101..1629430 (-) 330 WP_105904681.1 YbaB/EbfC family nucleoid-associated protein -
  INP89_RS08070 (INP89_08065) - 1629589..1630434 (-) 846 WP_197541619.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP89_RS08075 (INP89_08070) - 1630510..1633104 (-) 2595 WP_197541620.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.19 Da        Isoelectric Point: 6.2854

>NTDB_id=437008 INP89_RS08060 WP_197541618.1 1628366..1628968(-) (recR) [Haemophilus influenzae strain M1C112_1]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLAQALTEAMSRIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=437008 INP89_RS08060 WP_197541618.1 1628366..1628968(-) (recR) [Haemophilus influenzae strain M1C112_1]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGACCTAAATCGGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCAAGCACTCACAGAAGCCATGTCTAGAA
TTGGCCATTGCTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGACATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACACTTATCGCCACTTGATGGTATTGGTCCTCGCGAAATTGGCTTAGATTTGCTGCAAAAACGTTTAGTAG
AAGAATCTTTCCACGAAGTAATTCTTGCAACAAACCCAACGGTGGAAGGCGATGCAACAGCAAACTACATCGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCATGGCATTCCTGTGGGTGGGGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43