Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   INP89_RS02810 Genome accession   NZ_CP063127
Coordinates   565327..566748 (-) Length   473 a.a.
NCBI ID   WP_011962048.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M1C112_1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 560327..571748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP89_RS09460 - 560694..561272 (-) 579 WP_232086993.1 hypothetical protein -
  INP89_RS02770 (INP89_02765) - 561323..561553 (-) 231 WP_011962056.1 major capsid protein -
  INP89_RS02775 (INP89_02770) - 561572..561844 (-) 273 WP_011962055.1 hypothetical protein -
  INP89_RS02780 (INP89_02775) - 561930..562256 (-) 327 WP_005698175.1 DNA-binding protein -
  INP89_RS02785 (INP89_02780) - 562296..563444 (-) 1149 WP_011962053.1 phage/plasmid replication domain-containing protein -
  INP89_RS02790 (INP89_02785) - 563597..563782 (+) 186 WP_011962052.1 hypothetical protein -
  INP89_RS02795 (INP89_02790) - 563779..564240 (+) 462 WP_011962051.1 hypothetical protein -
  INP89_RS02800 (INP89_02795) - 564429..564623 (+) 195 WP_011962050.1 YodC family protein -
  INP89_RS02805 (INP89_02800) - 564610..564897 (-) 288 WP_011962049.1 hypothetical protein -
  INP89_RS02810 (INP89_02805) sbcB 565327..566748 (-) 1422 WP_011962048.1 exodeoxyribonuclease I Machinery gene
  INP89_RS02815 (INP89_02810) - 566761..567636 (-) 876 WP_061659708.1 hypothetical protein -
  INP89_RS02820 (INP89_02815) - 567640..568548 (-) 909 WP_011962046.1 DUF5655 domain-containing protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54387.62 Da        Isoelectric Point: 5.1962

>NTDB_id=436972 INP89_RS02810 WP_011962048.1 565327..566748(-) (sbcB) [Haemophilus influenzae strain M1C112_1]
MAKDFSFFIYDYESFGVNPATDRPAQFAGIRTDADFNIIGEPIMFYCKQTNDYLPAPEAVMVTGITPQECNEKGLSEPEF
SANILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQYFFENRGKKEIEKLVDTGTMTPLVHVSGMLGNYRGNCT
WVAPLSWHPTNQNALIVCDLTGDIDNLLAKSADELRTDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPETANR
LGIDRQLCLDNLAKLRASFDIREKVADIFNEERQFASNDNVETELYNGFFSNADKNNMAILRSLPAEKLSEHGLAFEDKR
ILELLFHYRARHFYKTLTRAEQIKWKKYRQNKLEKSAVEFESSLQRLAEEHSDNSEKLSLLQQVYEYGIKLLG

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=436972 INP89_RS02810 WP_011962048.1 565327..566748(-) (sbcB) [Haemophilus influenzae strain M1C112_1]
ATGGCAAAAGATTTCAGCTTTTTTATTTACGATTATGAAAGTTTTGGTGTAAATCCAGCAACAGATCGCCCTGCGCAATT
TGCGGGTATTCGTACAGATGCTGATTTTAATATCATTGGCGAACCAATAATGTTTTATTGTAAACAAACCAACGATTATT
TACCGGCTCCTGAAGCCGTAATGGTCACAGGAATTACGCCGCAAGAATGTAATGAAAAGGGGCTTTCAGAGCCTGAATTC
TCCGCAAATATCTTAGCAGAATTTTCCCAACCCAATACTTGTGTCATGGGTTATAACAATATTCGCTATGATGATGAAAT
GACGCGTTATACGTTTTATCGAAATTTTATTGATCCTTATGAATACAGCTGGAAAAATGGGAATTCACGCTGGGATTTGT
TAGATTTAGTGCGAGCCTGTTATGCCTTGCGTCCAGAAGGGATTAATTGGGCTTATGACGATGATGGAATGCCAAGTTTC
CGCTTAGAAAAACTCACTAAAGCAAATGGTATTGAGCATGAAAATGCTCATGATGCCATGGCGGATGTATATGCAACTAT
TGCTATGGCGAAATTAATTAAAGAAAAACAACCTAAATTATTCCAATATTTCTTTGAAAATCGCGGTAAAAAAGAAATCG
AAAAATTAGTTGATACAGGCACAATGACACCTTTAGTGCATGTTTCTGGAATGCTAGGGAATTATCGTGGAAATTGCACT
TGGGTTGCACCTTTATCTTGGCATCCGACAAACCAAAACGCACTCATTGTTTGTGATTTAACTGGCGATATCGATAATTT
ATTAGCCAAAAGTGCGGATGAATTACGGACAGATTTATATACCAAAAAATCTGAATTAGAAGAAAGAGGAGTTTCATCTG
TTCCGTTAAAGCTTGTGCATATCAATAAATGTCCTATTTTAGCACCAGCTAAAACTTTGTTACCAGAAACAGCAAATCGA
TTGGGTATTGATCGACAATTATGCTTGGATAATCTTGCAAAATTACGAGCATCTTTTGATATTCGTGAAAAAGTGGCGGA
TATTTTTAATGAAGAACGTCAATTTGCATCGAATGATAATGTAGAAACTGAGTTATACAATGGCTTTTTTAGCAATGCTG
ATAAAAATAATATGGCTATTTTACGTAGTTTACCTGCAGAAAAATTATCTGAACATGGTTTAGCTTTTGAAGATAAACGT
ATCCTTGAATTATTGTTCCATTATCGCGCTCGTCATTTTTATAAAACCCTCACACGCGCTGAACAAATTAAATGGAAAAA
ATACCGACAGAATAAACTTGAAAAAAGTGCGGTAGAGTTTGAATCAAGTTTACAACGTTTAGCTGAGGAACATTCAGATA
ATTCTGAAAAACTATCTTTGCTACAACAAGTATATGAATATGGTATAAAATTACTAGGTTAG

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-468)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

55.15

98.52

0.543