Detailed information NTG0436953

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INP90_RS07695
• Genome accession: NZ_CP063124
• Coordinates: 1564840..1566261 (+)
• Length: 473 a.a.
• NCBI ID: WP_197559424.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C113_1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1559840..1571261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP90_RS07690 (INP90_07690)	-	1563965..1564837 (+)	873	WP_178161163.1	DMT family transporter	-
INP90_RS07695 (INP90_07695)	sbcB	1564840..1566261 (+)	1422	WP_197559424.1	exodeoxyribonuclease I	Machinery gene
INP90_RS07700 (INP90_07700)	ftnA	1567033..1567518 (+)	486	WP_049366579.1	non-heme ferritin	-
INP90_RS07705 (INP90_07705)	ftnA	1567539..1568039 (+)	501	WP_005696114.1	non-heme ferritin	-
INP90_RS07715 (INP90_07715)	ttcA	1568379..1569308 (+)	930	WP_111327212.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
INP90_RS07720 (INP90_07720)	-	1569310..1569639 (+)	330	WP_111327211.1	TusE/DsrC/DsvC family sulfur relay protein	-
INP90_RS07725 (INP90_07725)	-	1569840..1570049 (+)	210	WP_007525241.1	TOBE domain-containing protein	-
INP90_RS07730 (INP90_07730)	-	1570297..1570557 (+)	261	WP_049365500.1	SemiSWEET family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54533.90 Da
• Isoelectric Point: 5.1175

>NTDB_id=436953 INP90_RS07695 WP_197559424.1 1564840..1566261(+) (sbcB) [Haemophilus parainfluenzae strain M1C113_1]
MATDFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPIMLYCKQTNDYLPAPEAVMVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQQCLNNLAKLRQSLDIREKVIETFSEEREFELSDNVETELYNGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAVKFEESLQRLAEEYSDNPTKLNLLQQVYEYGAKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=436953 INP90_RS07695 WP_197559424.1 1564840..1566261(+) (sbcB) [Haemophilus parainfluenzae strain M1C113_1]
ATGGCAACAGATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCAGCTCAATT
TGCGGGTATTCGTACCGATGCAGATTTCAATATCATTGGTGAGCCTATTATGTTGTATTGCAAGCAAACCAATGATTATT
TACCCGCCCCGGAAGCGGTTATGGTCACAGGAATTACGCCACAAGAATGTAATGAAAAGGGGATTCCTGAACCCGAATTT
GCCGCAAAAATTCTAGCTGAGTTTTCACAACCTAATACTTGTGTGATGGGTTATAACAACATTCGTTATGACGATGAAAT
GACTCGTTATACCTTTTACCGTAATTTCATCGATCCCTATGAGTATAGCTGGAAAAATGGCAATTCTCGTTGGGATTTAC
TGGATTTGGTTCGTGCCTGTTATGCTTTGCGTCCAGAGGGAATTAATTGGGCTTATGACGATGATGGTATGCCAAGCTTT
CGCTTAGAAAAACTAACCAAAGCAAATGGTATTGAGCATGAAAATGCCCATGATGCGATGGCGGATGTGTATGCAACCAT
CGCCATGGCTAAATTGATCAAAGAAAAGCAGCCTAAATTATTTCAATTCTTCTTTGAGCATAGAGGTAAAAAGGAAATTG
AGAAACTGATCGACACCGCGGAAATGACCCCATTAGTGCATGTTTCGGGCATGCTAGGGAATTATCGCGGCAATTGTGCT
TGGGTGGCACCATTAGCATGGCATCCAACTAATCAAAATGCCGTCATTGTCTGTGATTTATCAGGTGATATTGATAATTT
ACTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGCGAGCTAGAAGAAAGGGGAGTTTCATCAG
TTCCATTGAAATTGGTTCATATAAATAAATGCCCAATTTTGGCGCCTGCAAAAACTTTACTGCCTGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACAATGCTTAAATAATTTAGCAAAATTGCGTCAATCCTTAGATATACGAGAGAAAGTTATTGA
AACCTTCTCAGAGGAACGAGAATTTGAGCTGAGTGATAATGTAGAAACTGAGCTTTATAACGGTTTCTTTAGCAATGCGG
ATAAAAACAATATGGCTATTTTACGGGATTTACCGGCCGAGAAATTAGCTGAACATGGTTTAGCATTTGAAGATAAACGA
ATTCCTGAATTGTTATTCCATTATCGTGCAAGACATTTCTACAAAACCCTAAATCGTGCTGAGCAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTGCGGTTAAATTTGAGGAAAGTTTACAACGATTAGCTGAGGAATATTCGGATA
ATCCAACCAAACTGAATTTACTGCAACAGGTTTATGAATACGGAGCAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (9-188)

• Exonuclease C-terminal (ExoI_SH3) (208-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	56.009	98.52	0.552