Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HGD77_RS13780 Genome accession   NZ_CP051208
Coordinates   2848168..2850300 (-) Length   710 a.a.
NCBI ID   WP_415877830.1    Uniprot ID   -
Organism   Acinetobacter sp. NEB149     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2843168..2855300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGD77_RS13765 (HGD77_13770) - 2845598..2846476 (-) 879 WP_005265537.1 hypothetical protein -
  HGD77_RS13770 (HGD77_13775) aroB 2846487..2847566 (-) 1080 WP_005265536.1 3-dehydroquinate synthase -
  HGD77_RS13775 (HGD77_13780) aroK 2847595..2848131 (-) 537 WP_005265535.1 shikimate kinase AroK -
  HGD77_RS13780 (HGD77_13785) pilQ 2848168..2850300 (-) 2133 WP_415877830.1 type IV pilus secretin PilQ Machinery gene
  HGD77_RS13785 (HGD77_13790) - 2850363..2850891 (-) 529 Protein_2667 pilus assembly protein PilP -
  HGD77_RS13790 (HGD77_13795) - 2850891..2851613 (-) 723 Protein_2668 type 4a pilus biogenesis protein PilO -
  HGD77_RS13795 (HGD77_13800) - 2851610..2852249 (-) 640 Protein_2669 PilN domain-containing protein -
  HGD77_RS13800 (HGD77_13805) - 2852249..2853307 (-) 1059 Protein_2670 pilus assembly protein PilM -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77441.71 Da        Isoelectric Point: 4.9652

>NTDB_id=436953 HGD77_RS13780 WP_415877830.1 2848168..2850300(-) (pilQ) [Acinetobacter sp. NEB149]
MNRVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQLPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFDKAQQNLKQSSI
PVATREASSVDVTSDAQRARLTVNLTEAGAFTTRVEGNTFILKINSATPVAIAQPVQQQSAQGISNIGFQRGAQGEGQVV
IDLLGNNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSSVDAVNQNGSGVIKIQSAESYEYMAYQTDNKLTI
SLKRPEAKSPLRPKTVAYSGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNLD
KRRNGNVIWIAPVAELIKAEEEEAKAIKQSVALAPIQTEYMQLSYAKAADIEKLITQNKSAQNSSNSSNSSSNTTNNDDK
ESLLSSRGSVSIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARVVRASTEFAKEMGVKWGILSQGITNNDHLL
VGGSDTTLWDLRTPEIDSTTGIPEYEIQRPDNLNVDLGVENAAGRIAFGLISLSDFMLDLELSALQADGYGEVISTPKVL
TADKQKATVESGLEVPYQSTEGSGASATATTEFKDVVLKLDVTPSITPDGKVQMALDISSDSIAGVTPMGEYYLNKNRLN
TNVLVENGETVVLGGIFEQETLNNQTKVPFLGDIPYLGRLFRKDVKTDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=436953 HGD77_RS13780 WP_415877830.1 2848168..2850300(-) (pilQ) [Acinetobacter sp. NEB149]
ATGAATCGTGTGTTTCGTCAGTTTTCCATGGGTGCTGTTGCGATTGCGGTGATGCAAGCGGCTAGTGCACAGGTTTCAAT
GACCAATGTAGTACCCATGCAGCTTCCTGGACAAGGAACTGAGATTCGGGTGATGTTCAATGGTTTGCCACCACAACCAC
AGGCCTATCAATTAGAATCACCGTCACGTTTGATTCTGGACTTTGACAAGGCACAACAGAATTTAAAACAAAGCAGTATT
CCGGTGGCAACACGTGAAGCCAGTTCAGTGGATGTCACTTCGGATGCTCAGCGGGCACGTCTGACGGTAAACTTGACCGA
GGCAGGAGCCTTTACGACTCGCGTGGAAGGTAATACCTTTATTCTTAAAATTAACTCGGCAACTCCTGTAGCCATAGCTC
AACCTGTGCAGCAACAGTCAGCTCAGGGTATCAGTAATATTGGTTTCCAGCGCGGTGCGCAAGGTGAAGGCCAGGTCGTT
ATTGATCTGCTAGGAAATAATACTCCTGTTGATGTACAGCAGCAGGGTACCAAGGTTATTGTGCGCACTTTAGGTTCCAA
GATTCCGGCTCATTTGACCCGTCGTCTAAATGTAAATGATTTTGCTACACCAGTTTCCAGTGTCGATGCCGTGAATCAAA
ATGGTTCTGGCGTGATTAAGATTCAGTCTGCGGAAAGTTATGAATATATGGCTTACCAGACTGATAACAAGCTGACCATC
AGTTTGAAACGTCCGGAAGCCAAGAGCCCATTACGTCCTAAAACAGTTGCTTATTCGGGTAAGAAAATTTCTTTAGATTT
CCAGGATATTGAAGTCCGTCGTGTTTTACAGCTCTTGGCCGATTTTACCGATATCAATATGGTGGCCGCAGACAGTGTAC
AAGGCAATATTACTTTGCGCTTAAAAGAAGTGCCATGGGATCAGGCGCTGGATATCGTACTGAAAACCAAAAATCTGGAT
AAACGCCGCAATGGTAATGTGATCTGGATAGCACCAGTTGCAGAACTGATCAAGGCTGAAGAAGAAGAAGCTAAGGCTAT
TAAGCAGAGTGTTGCACTTGCTCCGATCCAAACTGAATATATGCAGCTGAGTTATGCTAAAGCCGCTGATATTGAGAAAC
TGATTACGCAGAATAAATCTGCACAGAACTCAAGTAATTCATCAAATAGTTCTTCTAATACTACTAATAATGATGATAAA
GAAAGCCTTTTGAGTTCTCGTGGTTCTGTATCTATCGATGCGCGTACTAACACATTAATTGTGAATGACACCCAGCCATT
TATTGATAAAATCCGTAATATGGTGGATCTGCTTGATGTACAGGTCAAGCAAGTGATGGTTGAAGCTCGTGTTGTTCGTG
CATCTACTGAATTTGCGAAAGAAATGGGCGTGAAATGGGGAATCTTATCTCAAGGTATTACCAACAATGATCATTTACTT
GTTGGTGGTAGCGATACCACACTTTGGGATTTAAGAACACCTGAAATCGATAGTACTACAGGAATACCAGAGTATGAAAT
TCAACGTCCAGATAATTTGAATGTTGATTTAGGAGTAGAAAATGCAGCCGGACGTATTGCTTTTGGTTTAATTAGTTTAT
CTGATTTCATGCTTGATCTTGAATTATCAGCGCTACAAGCGGATGGTTATGGTGAAGTCATTTCTACGCCTAAAGTTCTG
ACTGCGGACAAACAAAAAGCAACTGTTGAGTCTGGATTGGAAGTCCCATATCAATCAACTGAGGGTAGTGGTGCAAGTGC
AACAGCAACGACTGAATTTAAAGATGTGGTACTTAAACTGGATGTAACTCCAAGTATTACACCAGACGGTAAAGTGCAAA
TGGCATTGGATATTTCTAGTGACAGTATTGCGGGTGTAACACCGATGGGTGAGTATTATTTAAATAAGAATCGGTTAAAT
ACGAATGTCTTGGTTGAAAATGGTGAAACAGTCGTGCTTGGTGGAATTTTTGAACAAGAGACCCTGAATAACCAAACTAA
AGTACCATTCTTGGGAGACATTCCTTATTTAGGCCGTTTATTCCGTAAAGATGTAAAAACAGATAATAAGCGCGAGTTAC
TGATTTTCGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-444)

AMIN domain (AMIN)

(40-121)

Bacterial type II and III secretion system protein (Secretin)

(544-702)

Secretin and TonB N terminus short domain (STN)

(290-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.069

100

0.763
  pilQ Acinetobacter baumannii strain A118

74.931

100

0.762
  comQ Acinetobacter baylyi ADP1

70.014

100

0.707
  pilQ Pseudomonas aeruginosa PAK

40.398

99.014

0.4
  pilQ Legionella pneumophila strain Lp02

35.905

100

0.361