Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   HGD77_RS12965 Genome accession   NZ_CP051208
Coordinates   2698726..2699583 (-) Length   285 a.a.
NCBI ID   WP_017397977.1    Uniprot ID   -
Organism   Acinetobacter sp. NEB149     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2693726..2704583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HGD77_RS12950 (HGD77_12955) miaB 2695467..2696924 (+) 1458 WP_168730873.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  HGD77_RS12955 (HGD77_12960) - 2696962..2698038 (+) 1077 WP_004732214.1 PhoH family protein -
  HGD77_RS12960 (HGD77_12965) ybeY 2698061..2698543 (+) 483 WP_005265590.1 rRNA maturation RNase YbeY -
  HGD77_RS12965 (HGD77_12970) tonB2 2698726..2699583 (-) 858 WP_017397977.1 energy transducer TonB Machinery gene
  HGD77_RS12970 (HGD77_12975) - 2699846..2700532 (+) 687 WP_004732218.1 hypothetical protein -
  HGD77_RS12975 (HGD77_12980) - 2700692..2701405 (+) 714 WP_004732221.1 DUF3108 domain-containing protein -
  HGD77_RS12980 (HGD77_12985) - 2701494..2702069 (+) 576 WP_004732222.1 xanthine phosphoribosyltransferase -
  HGD77_RS12985 (HGD77_12990) - 2702385..2703059 (-) 675 WP_004732224.1 hypothetical protein -
  HGD77_RS12990 (HGD77_12995) - 2703144..2704349 (-) 1206 WP_121980168.1 CsgG/HfaB family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32677.02 Da        Isoelectric Point: 5.7562

>NTDB_id=436951 HGD77_RS12965 WP_017397977.1 2698726..2699583(-) (tonB2) [Acinetobacter sp. NEB149]
MPLVRTWWKDPVFSSAVLAAGILHLIVLTLEFGMPQDRDTSTKEIAVSLRQTDEKIEHADFLAQTDQQGSGQFREAHRMS
SDMPSPLMEQHAGEELQESLDMLQQQQELSFEEKVLMTTLSWQKQAEENQRKKMQEQLQSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQSKQDVSAAYLEKFREKVEFYGNRYYPEAAKQQNLAGEVRLMVILNQNGGIRAIRLIDSSGHAML
DEAAKSSVRKAAPFGAFDSKMKEISELRVIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=436951 HGD77_RS12965 WP_017397977.1 2698726..2699583(-) (tonB2) [Acinetobacter sp. NEB149]
ATGCCTCTGGTCAGAACTTGGTGGAAAGATCCAGTGTTTAGCAGTGCGGTGCTTGCCGCAGGCATTCTGCATTTGATCGT
GCTAACTCTGGAATTTGGTATGCCGCAAGATCGGGATACCAGTACCAAAGAAATCGCAGTCAGTTTGCGACAGACTGATG
AAAAAATTGAGCATGCCGATTTTTTGGCTCAAACGGACCAGCAGGGTTCCGGCCAGTTTAGAGAGGCGCATCGCATGTCG
AGTGATATGCCATCGCCGTTAATGGAGCAACATGCAGGCGAAGAACTGCAAGAAAGTCTGGATATGCTGCAACAGCAACA
GGAACTCAGTTTTGAAGAAAAAGTCCTGATGACCACCTTGAGCTGGCAAAAGCAGGCGGAAGAAAATCAGCGTAAAAAAA
TGCAGGAGCAATTACAGAGCCAGTTTCAGGCCAAAGCGGCCATGGTCGCCAGTCTGGAAGCGCAATATTTACAGCGTCAG
CAAAATTTCAGTCGTCAGCAAAAAATTAAGACTGTGGATGGTATTCAGTCCAAGCAGGATGTTTCGGCCGCATATCTGGA
AAAGTTCCGTGAAAAAGTGGAATTTTATGGGAACCGCTACTATCCGGAAGCAGCTAAGCAGCAGAATCTGGCAGGGGAAG
TACGGCTGATGGTGATCCTGAACCAGAATGGCGGAATTCGTGCCATTCGGCTGATTGACAGTTCAGGACATGCCATGCTG
GACGAAGCAGCCAAATCTTCCGTGCGTAAGGCAGCACCATTTGGTGCTTTCGACAGTAAAATGAAAGAAATTTCCGAGCT
GCGGGTGATTCGTACCTGGCGATTTGATCCGGCTGAAGCAGAGTTTGAAGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.118

97.895

0.716