Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   INP91_RS02400 Genome accession   NZ_CP063123
Coordinates   495753..496265 (+) Length   170 a.a.
NCBI ID   WP_049365758.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C120_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 490753..501265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP91_RS02380 (INP91_02380) psiE 490836..491252 (+) 417 WP_178165508.1 phosphate-starvation-inducible protein PsiE -
  INP91_RS02385 (INP91_02385) - 491288..492133 (-) 846 WP_197546350.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP91_RS09800 - 492200..492892 (-) 693 Protein_459 penicillin-binding protein 1A -
  INP91_RS02390 (INP91_02390) - 492968..494818 (-) 1851 Protein_460 penicillin-binding protein 1A -
  INP91_RS02395 (INP91_02395) comA 494918..495766 (+) 849 WP_197546137.1 pilus assembly protein PilM Machinery gene
  INP91_RS02400 (INP91_02400) comB 495753..496265 (+) 513 WP_049365758.1 hypothetical protein Machinery gene
  INP91_RS02405 (INP91_02405) comC 496337..496807 (+) 471 WP_232086149.1 YdbH domain-containing protein Machinery gene
  INP91_RS02410 (INP91_02410) - 496804..497187 (+) 384 WP_049365760.1 pilus assembly protein PilP -
  INP91_RS02415 (INP91_02415) comE 497189..498571 (+) 1383 WP_197546138.1 type IV pilus secretin PilQ Machinery gene
  INP91_RS02420 (INP91_02420) - 498591..499280 (+) 690 WP_197546139.1 ComF family protein -
  INP91_RS02425 (INP91_02425) nfuA 499396..499980 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20233.34 Da        Isoelectric Point: 5.5989

>NTDB_id=436857 INP91_RS02400 WP_049365758.1 495753..496265(+) (comB) [Haemophilus parainfluenzae strain M1C120_2]
MLSLNLLPWRLEQHQKAFRRFMWQGLIWLACSVLIVVGLNQLNEQQGQALSQIKEKLTQITHQVHQKRIQVQQLQSNLKE
LNELTEMETEYVYRMLNLLTELPLQQGELDEFTLNVKQVVLSGMTESQQEFEEIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIPLSEPVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=436857 INP91_RS02400 WP_049365758.1 495753..496265(+) (comB) [Haemophilus parainfluenzae strain M1C120_2]
ATGTTAAGCCTTAATCTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCCTTTCGTCGTTTTATGTGGCAAGGTTTAAT
TTGGCTAGCTTGTTCAGTTTTGATTGTTGTTGGATTGAACCAACTCAATGAACAACAAGGGCAAGCCCTAAGCCAGATAA
AAGAAAAACTGACACAAATTACTCATCAAGTCCATCAGAAACGCATTCAAGTTCAGCAACTACAAAGTAACTTAAAAGAA
CTGAATGAGCTGACAGAAATGGAGACGGAATATGTGTATCGAATGCTTAATTTATTAACTGAGTTGCCATTACAACAAGG
TGAGTTAGATGAATTTACGCTCAATGTTAAGCAAGTTGTCCTTTCAGGCATGACAGAAAGCCAACAAGAGTTTGAAGAGA
TACATCAATTTCTCAAACGCCATTTTACAGAGGTTAACTTAACTAAGTTTCAACCGGTGCAACAGCAGTTATTTTTTCAA
TTTGATATTCCGCTATCGGAGCCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

40.741

95.294

0.388
  comB Haemophilus influenzae Rd KW20

40.123

95.294

0.382