Detailed information NTG0043684

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LPV_RS06410
• Genome accession: NC_018140
• Coordinates: 1406065..1407090 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1401065..1412090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPV_RS06380 (LPV_1391)	-	1401497..1401814 (+)	318	WP_014843747.1	DUF2845 domain-containing protein	-
LPV_RS06385 (LPV_1392)	-	1401851..1402222 (+)	372	WP_014843748.1	protease inhibitor I42 family protein	-
LPV_RS06390 (LPV_1393)	-	1402279..1403994 (-)	1716	WP_014843749.1	NAD-dependent malic enzyme	-
LPV_RS06395 (LPV_1394)	-	1404074..1404457 (+)	384	WP_014843750.1	hypothetical protein	-
LPV_RS06400 (LPV_1395)	surE	1404460..1405218 (+)	759	WP_014841465.1	5'/3'-nucleotidase SurE	-
LPV_RS06405 (LPV_1396)	-	1405237..1405980 (+)	744	WP_027224096.1	peptidoglycan DD-metalloendopeptidase family protein	-
LPV_RS06410 (LPV_1397)	rpoS	1406065..1407090 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
LPV_RS06415 (LPV_1398)	hmgA	1407193..1408443 (-)	1251	WP_014843752.1	homogentisate 1,2-dioxygenase	-
LPV_RS06420 (LPV_1399)	-	1408591..1409334 (+)	744	WP_014843753.1	YebC/PmpR family DNA-binding transcriptional regulator	-
LPV_RS06425 (LPV_1400)	ruvC	1409334..1409858 (+)	525	WP_014843754.1	crossover junction endodeoxyribonuclease RuvC	-
LPV_RS06430 (LPV_1401)	ruvA	1409855..1410454 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
LPV_RS06435 (LPV_1402)	-	1410506..1410826 (+)	321	WP_014843755.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=43684 LPV_RS06410 WP_011213596.1 1406065..1407090(+) (rpoS) [Legionella pneumophila subsp. pneumophila]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=43684 LPV_RS06410 WP_011213596.1 1406065..1407090(+) (rpoS) [Legionella pneumophila subsp. pneumophila]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGCT
GTCAGAAGAGGATATTGAACCTGATATCGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGCTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCAGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGATGTTGGTAAGGAAATTGATTTGACCCGTGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548