Detailed information NTG0436830

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INP92_RS07210
• Genome accession: NZ_CP063122
• Coordinates: 1483977..1485398 (+)
• Length: 473 a.a.
• NCBI ID: WP_197553791.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C125_4
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1478977..1490398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP92_RS07205 (INP92_07200)	-	1483102..1483974 (+)	873	WP_197553788.1	DMT family transporter	-
INP92_RS07210 (INP92_07205)	sbcB	1483977..1485398 (+)	1422	WP_197553791.1	exodeoxyribonuclease I	Machinery gene
INP92_RS07215 (INP92_07210)	ftnA	1486169..1486654 (+)	486	WP_005696115.1	non-heme ferritin	-
INP92_RS07220 (INP92_07215)	ftnA	1486675..1487175 (+)	501	WP_005696114.1	non-heme ferritin	-
INP92_RS07230 (INP92_07225)	ttcA	1487515..1488444 (+)	930	WP_197553794.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
INP92_RS07235 (INP92_07230)	-	1488446..1488775 (+)	330	WP_197544556.1	TusE/DsrC/DsvC family sulfur relay protein	-
INP92_RS07240 (INP92_07235)	-	1488973..1489182 (+)	210	WP_007525241.1	TOBE domain-containing protein	-
INP92_RS07245 (INP92_07240)	-	1489434..1489694 (+)	261	WP_049373448.1	SemiSWEET family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54510.88 Da
• Isoelectric Point: 5.1143

>NTDB_id=436830 INP92_RS07210 WP_197553791.1 1483977..1485398(+) (sbcB) [Haemophilus parainfluenzae strain M1C125_4]
MANNFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCAMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEEMGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYNGFFSNADKNNMAILRDLPPEKLAEHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAVKFEESLQRLAEEYSDNPTKLNLLQQVYEYGAKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=436830 INP92_RS07210 WP_197553791.1 1483977..1485398(+) (sbcB) [Haemophilus parainfluenzae strain M1C125_4]
ATGGCAAACAATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCAGCTCAATT
TGCCGGTATTCGTACCGATGCAGATTTTAATATTATTGGTGAGCCTGTTATGTTGTATTGCAAGCAAACCAATGATTATT
TACCTGCCCCGGAAGCCGTAATGGTCACAGGAATCACGCCACAAGAATGTAATGAAAAGGGGATTCCTGAACCTGAATTT
GCCGCAAAAATTCTAGCTGAATTTTCACAACCCAATACCTGTGCGATGGGATACAACAACATTCGTTATGACGATGAAAT
GACTCGTTATACCTTTTACCGTAACTTCATCGATCCCTATGAATATAGCTGGAAAAATGGCAATTCTCGTTGGGATTTAC
TAGATTTGGTCCGAGCTTGCTATGCACTGCGTCCAGAAGGGATAAATTGGGCTTATGACGATGATGGTATGCCAAGCTTT
CGCTTAGAAAAATTAACCAAAGCAAATGGTATTGAGCATGAAAATGCCCATGATGCGATGGCGGATGTGTATGCAACTAT
TGCCATGGCTAAATTAATCAAAGAAAAGCAGCCTAAATTATTTCAATTTTTCTTTGAGCATAGAGGTAAAAAGGAAATTG
AGAAACTGATCGACACCGCTGAAATGACACCATTAGTGCACGTTTCAGGCATGCTAGGGAATTATCGCGGTAATTGTGCT
TGGGTAGCACCATTAGCGTGGCATCCAACTAATCAAAATGCCGTAATCGTCTGTGATTTATCAGGTGATATTGATAATTT
GCTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGCGAGCTAGAAGAAATGGGAGTTTCATCAG
TCCCACTAAAATTGGTTCATATTAATAAATGCCCAATTTTGGCTCCTGCGAAAACTTTGCTGCCGGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACATTGCTTAGATAATTTAGCAAAATTGCGCCAATCCTTAGATATTCGCGAGAAAGTTATTGA
AATCTTCTCAGAAGAACGTGAATTTGAGCCAAGTGATAATGTAGAAACTGAACTTTATAACGGTTTCTTTAGCAATGCCG
ATAAAAACAACATGGCTATTTTACGCGATTTACCGCCTGAAAAATTAGCTGAGCATGGTTTAGCATTTGAAGATAAACGA
ATTCCTGAATTGTTGTTCCATTATCGTGCAAGACATTTCTATAAAACTCTAAATCGTGCAGAACAAATCAAATGGCAAAA
ATATCGCCAACGTAAGTTAGAACAAAGTGCGGTTAAGTTTGAGGAAAGTCTACAACGGTTAGCGGAGGAATATTCGGATA
ATCCAACCAAACTGAATTTACTACAACAGGTTTATGAATACGGTGCAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (9-188)

• Exonuclease C-terminal (ExoI_SH3) (208-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	56.009	98.52	0.552