Detailed information NTG0436788

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: INP92_RS00465
• Genome accession: NZ_CP063122
• Coordinates: 97312..99882 (-)
• Length: 856 a.a.
• NCBI ID: WP_197554254.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C125_4
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 92312..104882

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP92_RS00445 (INP92_00445)	secF	94169..95143 (+)	975	WP_005697896.1	protein translocase subunit SecF	-
INP92_RS00450 (INP92_00450)	-	95226..96266 (-)	1041	WP_197544833.1	AI-2E family transporter	-
INP92_RS00455 (INP92_00455)	glnB	96266..96604 (-)	339	WP_005697836.1	nitrogen regulatory protein P-II	-
INP92_RS00460 (INP92_00460)	mog	96606..97199 (-)	594	WP_049362318.1	molybdopterin adenylyltransferase	-
INP92_RS00465 (INP92_00465)	clpC	97312..99882 (-)	2571	WP_197554254.1	ATP-dependent chaperone ClpB	Regulator
INP92_RS00470 (INP92_00470)	-	100018..100590 (-)	573	WP_049384602.1	5-formyltetrahydrofolate cyclo-ligase	-
INP92_RS00480 (INP92_00480)	-	100906..101697 (-)	792	WP_005697879.1	outer membrane protein assembly factor BamD	-
INP92_RS00485 (INP92_00485)	rluD	101807..102781 (+)	975	WP_049384559.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
INP92_RS00490 (INP92_00490)	pgeF	102783..103520 (+)	738	WP_049384561.1	peptidoglycan editing factor PgeF	-
INP92_RS00495 (INP92_00495)	ruvX	103569..103988 (-)	420	WP_197554257.1	Holliday junction resolvase RuvX	-
INP92_RS00500 (INP92_00500)	-	103988..104548 (-)	561	WP_197554260.1	YqgE/AlgH family protein	-

Sequence

Protein

• Length: 856 a.a.
• Molecular weight: 95481.93 Da
• Isoelectric Point: 5.0525

>NTDB_id=436788 INP92_RS00465 WP_197554254.1 97312..99882(-) (clpC) [Haemophilus parainfluenzae strain M1C125_4]
MNIEKFTTKFQQALSEAQSLALGKDNQFIEPVHLLAALLNQQDGSIAPILTASGVNVALLRNELNAELNKLPQVSGNGGD
VQISRQLLNLLNLCDKLAQQKQDKFISSELFLLAALEERGALNDILKKCGAKKEQILQAIQHIRGGQSVNDQNAEESRQA
LEKYTIDLTARAESGKLDPVIGRDEEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKNKRVLSL
DMGALIAGAKYRGEFEERLKAVLNELAKEEGRVILFIDEIHTMVGAGKTDGAMDAGNLLKPSLARGELHCVGATTLDEYR
QYIEKDAALERRFQKVFVDEPSVEDTIAILRGLKERYEIHHHVDITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASS
IRMEIDSKPEPLDRLERRIIQLKLEQQALQKEEDEASRKRLEMLEKELSDKEREYAELEEVWKSEKAALSGSQHIKQELD
AAKTEMEQARRAGDLSKMSELQYGRIPELEKQLAAAETGEGKEMSLLRYRVTDEEIAEVLSKATGIPVSKMMEGEKEKLL
RMEEELHKRVIGQEEAVDAVANAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKTLAKFLFDSEDAMVRIDMSEFMEK
HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL
GSDLIQGSKDESYGEMKALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTEALLD
FIGEVGYDPIYGARPLKRAIQQEIENSLAQQVLSGQLLPGKVVTVDYTDGKVQARQ

Nucleotide

• Length: 2571 bp

>NTDB_id=436788 INP92_RS00465 WP_197554254.1 97312..99882(-) (clpC) [Haemophilus parainfluenzae strain M1C125_4]
ATGAATATTGAAAAATTTACCACTAAATTCCAACAAGCACTTAGTGAAGCACAGTCATTAGCGCTTGGTAAAGATAATCA
GTTTATCGAACCAGTGCATTTATTGGCCGCACTTTTAAATCAACAAGACGGTTCAATTGCACCGATTTTGACAGCAAGTG
GCGTGAATGTCGCGTTATTACGTAATGAATTAAATGCAGAATTGAATAAATTGCCACAAGTGTCAGGTAATGGCGGAGAC
GTGCAAATTTCCCGTCAATTGCTTAACTTATTGAATTTATGTGACAAATTAGCTCAACAAAAACAAGATAAATTTATTTC
CAGTGAATTGTTCTTATTGGCTGCTCTTGAAGAGCGTGGCGCATTAAATGACATTTTGAAAAAATGTGGTGCGAAAAAAG
AACAAATTTTACAAGCGATTCAACATATTCGCGGAGGACAAAGCGTGAACGATCAAAATGCAGAAGAAAGCAGACAAGCT
CTTGAAAAATATACGATTGATTTAACAGCTCGTGCTGAAAGTGGCAAACTCGACCCAGTTATTGGTCGTGATGAAGAAAT
TCGTCGAGCCATTCAAGTATTACAACGTCGTACCAAAAATAACCCAGTATTAATCGGTGAACCTGGTGTAGGTAAAACTG
CTATTGTGGAAGGTTTGGCACAACGTATTGTCAATGGTGAAGTACCAGAAGGCTTGAAAAATAAACGTGTCCTTTCTTTA
GATATGGGTGCCTTGATTGCAGGTGCAAAATATCGTGGTGAATTTGAAGAACGTTTAAAAGCGGTATTAAATGAACTTGC
AAAAGAAGAAGGTCGCGTGATCCTCTTTATTGATGAAATCCATACCATGGTTGGTGCAGGTAAAACTGACGGTGCGATGG
ATGCAGGTAACTTATTAAAACCAAGTTTAGCACGTGGTGAATTACACTGTGTGGGTGCAACAACGTTAGACGAATATCGT
CAATATATCGAGAAAGATGCCGCACTTGAGCGCCGTTTCCAAAAAGTCTTTGTAGATGAACCAAGTGTAGAAGATACCAT
TGCGATCTTACGTGGTTTGAAAGAGCGTTATGAGATCCATCATCATGTAGATATTACTGACCCAGCAATCGTGGCAGCGG
CAACACTTTCACATCGTTATATTTCCGATCGTCAATTGCCGGATAAAGCCATCGACTTAATTGATGAGGCGGCTTCAAGC
ATCCGTATGGAAATTGATTCTAAACCAGAGCCACTCGATCGTCTTGAACGCCGTATCATCCAATTAAAATTGGAACAACA
GGCATTACAAAAAGAAGAAGATGAAGCAAGCCGTAAACGTTTAGAAATGTTAGAAAAAGAACTTTCTGATAAAGAACGTG
AATATGCTGAACTTGAAGAAGTATGGAAATCAGAAAAAGCGGCGCTTTCAGGTTCTCAACACATCAAACAAGAGTTAGAT
GCGGCGAAAACTGAAATGGAACAAGCGCGTCGTGCTGGTGATTTAAGCAAAATGTCTGAGCTTCAATACGGTCGTATTCC
TGAATTGGAAAAACAACTTGCTGCCGCTGAAACCGGTGAAGGCAAAGAAATGAGCCTATTACGCTATCGTGTGACAGATG
AAGAAATTGCGGAAGTACTTTCTAAAGCAACCGGCATTCCAGTTTCTAAAATGATGGAAGGAGAGAAAGAAAAACTCTTA
CGCATGGAAGAAGAATTGCATAAACGTGTGATCGGTCAAGAAGAAGCGGTAGATGCTGTCGCGAACGCAATTCGTCGTAG
CCGAGCTGGACTTTCAGATCCTAACCGCCCAATTGGTTCATTCTTATTCTTAGGACCAACGGGGGTAGGTAAAACAGAGC
TTTGCAAAACGTTGGCGAAATTCCTCTTTGACAGTGAAGATGCGATGGTGCGTATTGATATGTCAGAGTTTATGGAAAAA
CACAGCGTATCTCGTTTAGTGGGTGCGCCTCCAGGCTACGTAGGCTATGAAGAAGGTGGTTACTTAACTGAAGCGGTACG
TCGTCGTCCATATTCTGTAATTTTGCTCGATGAAGTGGAAAAAGCCCATGCGGATGTATTCAACATCTTATTACAAGTGT
TGGATGATGGCCGTTTAACTGATGGTCAAGGCCGTACTGTGGACTTCCGTAACACAGTCGTGATTATGACCTCTAACTTG
GGTTCTGATTTGATCCAAGGTAGCAAAGACGAAAGCTATGGAGAAATGAAAGCCTTAGTGATGTCAGTGGTGAGCCAACA
TTTCCGTCCGGAATTCATCAACCGTATTGACGAAACTGTGGTATTCCACCCACTTGGCAAAGAAAATATCCGTGCGATTG
CAAGCATCCAATTAGAACGTTTAGCAAAACGTATGGAAACCCGTGGTTACGAATTAGTGTTTACCGAAGCGTTATTAGAT
TTCATTGGTGAAGTGGGTTACGACCCAATTTATGGGGCGCGTCCATTAAAACGTGCAATCCAACAAGAGATCGAAAACAG
CTTGGCACAACAAGTTCTATCTGGTCAATTATTACCAGGTAAAGTGGTAACCGTTGATTATACTGACGGCAAAGTTCAAG
CCAGACAATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-845)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-336)

• AAA lid domain (AAA_lid_9) (342-443)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-758)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.691	100	0.482
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.003	100	0.442
clpE	Streptococcus pneumoniae Rx1	48.458	79.556	0.386
clpE	Streptococcus pneumoniae D39	48.458	79.556	0.386
clpE	Streptococcus pneumoniae R6	48.458	79.556	0.386
clpC	Lactococcus lactis subsp. cremoris KW2	46.609	80.958	0.377
clpE	Streptococcus pneumoniae TIGR4	45.827	79.79	0.366