Detailed information NTG0436770

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INP93_RS07520
• Genome accession: NZ_CP063121
• Coordinates: 1534300..1535721 (+)
• Length: 473 a.a.
• NCBI ID: WP_197544554.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C130_2
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1529300..1540721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP93_RS07515 (INP93_07510)	-	1533425..1534297 (+)	873	WP_193451855.1	DMT family transporter	-
INP93_RS07520 (INP93_07515)	sbcB	1534300..1535721 (+)	1422	WP_197544554.1	exodeoxyribonuclease I	Machinery gene
INP93_RS07525 (INP93_07520)	ftnA	1536492..1536977 (+)	486	WP_005696115.1	non-heme ferritin	-
INP93_RS07530 (INP93_07525)	ftnA	1536998..1537498 (+)	501	WP_005696114.1	non-heme ferritin	-
INP93_RS07540 (INP93_07535)	ttcA	1537838..1538767 (+)	930	WP_197544555.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
INP93_RS07545 (INP93_07540)	-	1538769..1539098 (+)	330	WP_197544556.1	TusE/DsrC/DsvC family sulfur relay protein	-
INP93_RS07550 (INP93_07545)	-	1539296..1539505 (+)	210	WP_007525241.1	TOBE domain-containing protein	-
INP93_RS07555 (INP93_07550)	-	1539757..1540017 (+)	261	WP_049373448.1	SemiSWEET family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54531.84 Da
• Isoelectric Point: 5.0456

>NTDB_id=436770 INP93_RS07520 WP_197544554.1 1534300..1535721(+) (sbcB) [Haemophilus parainfluenzae strain M1C130_2]
MANDFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVTGITPQECNEKGISEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLVDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQQCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYNGFFSNADKNNMAILRDLPPEKLAEHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAVKFEESLQRLAEEYSDNPTKLNLLQQVYEYGAKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=436770 INP93_RS07520 WP_197544554.1 1534300..1535721(+) (sbcB) [Haemophilus parainfluenzae strain M1C130_2]
ATGGCAAACGATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCAGCTCAATT
TGCCGGTATTCGTACCGATGCAGATTTTAATATTATTGGCGAGCCTGTTATGTTGTATTGCAAGCAAACCAATGATTATT
TGCCCGCACCGGAAGCCGTAATGGTCACAGGAATCACGCCACAAGAATGTAATGAAAAGGGGATTTCAGAACCTGAATTT
GCTGCAAAAATTCTAGCTGAGTTTTCACAACCTAATACTTGTGTGATGGGTTACAACAACATTCGTTATGACGATGAAAT
GACTCGTTATACCTTTTACCGTAACTTCATCGATCCCTATGAATATAGCTGGAAAAATGGCAATTCTCGTTGGGATTTAC
TGGATTTGGTACGAGCCTGTTATGCTTTGCGTCCAGAGGGAATTAATTGGGCTTATGACGATGATGGTATGCCAAGCTTT
CGCTTAGAAAAACTAACCAAAGCAAATGGTATTGAGCATGAAAATGCCCATGATGCGATGGCGGATGTGTATGCAACCAT
CGCCATGGCTAAATTAATCAAAGAAAAGCAGCCTAAATTATTTCAATTCTTCTTTGAGCATAGAGGTAAAAAGGAAATTG
AGAAACTGGTCGACACTGCGGAAATGACACCATTAGTGCACGTTTCGGGCATGCTAGGCAATTATCGCGGCAATTGTGCT
TGGGTGGCACCATTAGCATGGCATCCAACTAATCAAAATGCCGTAATCGTCTGTGATTTATCAGGTGATATTGATAATTT
ACTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGTGAGCTAGAAGAAAGGGGAGTTTCATCAG
TTCCATTAAAATTGGTTCATATTAATAAATGCCCAATTTTGGCGCCTGCAAAAACATTACTGCCAGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACAATGCTTAGATAATTTAGCAAAATTGCGCCAATCCTTAGATATACGCGAGAAAGTTATTGA
AATCTTCTCAGAAGAACGAGAATTTGAGCCGAGTGATAATGTAGAAACGGAACTTTATAACGGTTTCTTTAGCAATGCGG
ATAAAAACAATATGGCTATTTTACGCGATTTACCACCTGAAAAATTAGCTGAGCATGGTTTAGCATTTGAAGATAAACGA
ATTCCTGAATTGTTATTCCATTATCGTGCCAGACATTTCTATAAAACTCTAAATCGTGCAGAACAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTGCGGTTAAATTTGAGGAAAGTCTACAACGGTTAGCGGAGGAATATTCGGATA
ATCCAACCAAACTGAATTTACTACAACAGGTTTATGAATACGGAGCAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (9-188)

• Exonuclease C-terminal (ExoI_SH3) (208-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	56.009	98.52	0.552