Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HEP73_RS15470 Genome accession   NZ_CP051189
Coordinates   3626494..3627879 (-) Length   461 a.a.
NCBI ID   WP_185820655.1    Uniprot ID   A0A7G7SZF0
Organism   Xanthomonas sp. GW     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3621494..3632879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP73_RS15450 (HEP73_03047) - 3622342..3623646 (+) 1305 WP_185820652.1 histidine-type phosphatase -
  HEP73_RS15455 (HEP73_03048) - 3623759..3625063 (+) 1305 WP_185820653.1 jacalin-like lectin -
  HEP73_RS15460 (HEP73_03049) - 3625224..3625835 (-) 612 WP_185820654.1 hypothetical protein -
  HEP73_RS15465 (HEP73_03050) - 3626024..3626410 (-) 387 WP_185813489.1 DUF805 domain-containing protein -
  HEP73_RS15470 (HEP73_03051) radA 3626494..3627879 (-) 1386 WP_185820655.1 DNA repair protein RadA Machinery gene
  HEP73_RS15475 (HEP73_03052) - 3628183..3628854 (-) 672 WP_185820656.1 hypothetical protein -
  HEP73_RS15480 (HEP73_03053) - 3629073..3630962 (-) 1890 WP_185820657.1 tetratricopeptide repeat protein -
  HEP73_RS15485 (HEP73_03054) - 3631106..3631540 (-) 435 WP_185820658.1 MarR family winged helix-turn-helix transcriptional regulator -
  HEP73_RS15490 (HEP73_03055) - 3631627..3632511 (+) 885 WP_185820659.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48424.60 Da        Isoelectric Point: 7.0285

>NTDB_id=436740 HEP73_RS15470 WP_185820655.1 3626494..3627879(-) (radA) [Xanthomonas sp. GW]
MAKAKTAYVCGDCGAEYNKWQGQCTECGAWNSLSEIVLESASAAKAPAAARRSGWAGKTEAPKITALKDVEHRDQARVST
GIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALAKMASTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALAETGI
EQILQQASAAQPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMVDA
VLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGSSANQPGSCVMVTREGTRPLMVEVQALVD
ASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGILVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDKPLAEKTIAFGE
VGLSGEIRPVPNGEDRLREAATHGFKRAIVPKANAPKTGVVKGMEVIAVERLSQALEAASE

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=436740 HEP73_RS15470 WP_185820655.1 3626494..3627879(-) (radA) [Xanthomonas sp. GW]
ATGGCAAAAGCGAAAACGGCCTATGTGTGCGGCGACTGCGGCGCCGAGTACAACAAATGGCAGGGCCAGTGCACCGAGTG
CGGGGCGTGGAATTCGCTGAGCGAGATCGTGCTGGAAAGCGCGTCGGCGGCGAAGGCGCCGGCCGCGGCGCGGCGCAGCG
GCTGGGCCGGCAAGACCGAGGCGCCGAAGATCACCGCGCTCAAGGACGTGGAGCATCGCGACCAGGCGCGCGTGTCCACC
GGCATCGGCGAATTCGACCGGGTGCTCGGCGGCGGCCTGGTCGAAGGCGCGGTGGTGCTGATCGGTGGCGACCCGGGCAT
CGGCAAGTCGACCCTGTTGTTGCAGGCACTGGCCAAGATGGCCAGCACGCTGCCGGTGCTGTACGTGACCGGCGAGGAAT
CGCTGGCCCAGGTCGCCGGCCGCGCGGTGCGCCTGGACCTGCCGCTGGACGGCCTCAACGCGCTGGCCGAGACCGGCATC
GAACAGATCCTGCAGCAGGCCAGCGCGGCCCAGCCCAAGCTGATCGTGGCCGACTCGGTGCAGACGCTGTGGACCGAGTC
GCTGACCGCCGCGCCCGGCTCGGTCAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTACGCCAAGGAGACCGGCA
CCGCGGTGTTCCTGGTCGGCCACGTGACCAAGGAAGGCGGCATCGCCGGGCCGCGCGTGCTCGAGCACATGGTCGATGCG
GTGTTGTATTTCGAGGGCGAGAGCGGCAGCCGTTTCCGCCTGCTGCGCGCGTTCAAGAACCGCTTCGGCGCGGTCAACGA
ACTGGGCGTGTTCGCGATGGGCGAGAAGGGACTGAAGGAAGTGTCCAATCCGTCGGCGATCTTCCTGTCCGGCAGCAGCG
CCAACCAGCCCGGCAGCTGCGTGATGGTGACGCGCGAAGGCACGCGGCCGCTGATGGTGGAAGTGCAGGCGCTGGTCGAT
GCCTCGCCGCTGTCCAATCCGCGGCGGGTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCGATGCTGTTGGCGGTGCTGCA
TCGGCACGGCGGCATCCTGGTCGGCGACCAGGATGTGTTCGTCAACGTGGTCGGCGGCATCCGCGTGCAGGAGACCGCGG
CCGATCTGCCGGTGCTGTTGGCGGTGCTGTCCTCGCTGCGCGACAAGCCGCTGGCGGAGAAGACCATCGCCTTCGGCGAG
GTCGGCCTGTCCGGCGAGATCCGCCCGGTGCCCAACGGCGAGGACCGGCTGCGCGAAGCGGCCACGCACGGTTTCAAGCG
CGCCATCGTGCCCAAGGCCAATGCGCCCAAGACCGGCGTGGTCAAGGGCATGGAAGTGATCGCGGTGGAGCGCCTGTCGC
AGGCGCTGGAGGCGGCGAGCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(88-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7SZF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.59

100

0.486
  radA Streptococcus mitis SK321

44.662

99.566

0.445
  radA Streptococcus pneumoniae D39

44.201

99.132

0.438
  radA Streptococcus pneumoniae TIGR4

44.201

99.132

0.438
  radA Streptococcus mitis NCTC 12261

44.201

99.132

0.438
  radA Streptococcus pneumoniae R6

44.201

99.132

0.438
  radA Streptococcus pneumoniae Rx1

44.201

99.132

0.438