Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   INP94_RS08460 Genome accession   NZ_CP063120
Coordinates   1664598..1666019 (-) Length   473 a.a.
NCBI ID   WP_197543319.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1659598..1671019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS10835 - 1659934..1660035 (+) 102 Protein_1626 DNA helicase UvrD -
  INP94_RS08425 (INP94_08420) - 1660061..1660438 (+) 378 WP_197543315.1 hypothetical protein -
  INP94_RS08430 (INP94_08425) - 1660428..1660619 (+) 192 WP_197543316.1 hypothetical protein -
  INP94_RS08435 (INP94_08430) - 1660603..1661304 (+) 702 WP_197543317.1 hypothetical protein -
  INP94_RS08440 (INP94_08435) - 1661333..1662319 (-) 987 WP_232087397.1 tyrosine-type recombinase/integrase -
  INP94_RS08450 (INP94_08445) ftnA 1662821..1663321 (-) 501 WP_197543318.1 non-heme ferritin -
  INP94_RS08455 (INP94_08450) ftnA 1663342..1663827 (-) 486 WP_049366579.1 non-heme ferritin -
  INP94_RS08460 (INP94_08455) sbcB 1664598..1666019 (-) 1422 WP_197543319.1 exodeoxyribonuclease I Machinery gene
  INP94_RS08465 (INP94_08460) - 1666022..1666894 (-) 873 WP_197543320.1 DMT family transporter -
  INP94_RS08470 (INP94_08465) - 1666899..1667807 (-) 909 WP_197544288.1 DUF5655 domain-containing protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54536.90 Da        Isoelectric Point: 5.0432

>NTDB_id=436710 INP94_RS08460 WP_197543319.1 1664598..1666019(-) (sbcB) [Haemophilus parainfluenzae strain M1C137_2]
MANDFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPIMLYCKQTNDYLPAPEAVMVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYIFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQHCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYSGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQNAVKFEESLQQLAEEYSDNPTKLNLLQQVYEYGAKLLS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=436710 INP94_RS08460 WP_197543319.1 1664598..1666019(-) (sbcB) [Haemophilus parainfluenzae strain M1C137_2]
ATGGCAAACGATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCTGCTCAATT
TGCTGGTATTCGTACCGATGCAGATTTCAATATCATTGGTGAGCCTATTATGTTGTATTGCAAGCAAACTAATGATTATT
TGCCAGCTCCCGAGGCCGTAATGGTCACAGGAATCACGCCACAAGAATGTAATGAAAAGGGGATTCCTGAACCTGAATTT
GCCGCAAAAATTCTAGCTGAGTTTTCACAACCTAATACTTGTGTGATGGGGTACAACAACATTCGTTATGACGATGAAAT
GACTCGTTATATCTTTTACCGTAACTTCATCGATCCCTATGAATATAGCTGGAAAAATGGCAATTCTCGGTGGGATTTAC
TAGATTTGGTTCGAGCCTGTTATGCTTTGCGTCCAGAGGGAATTAATTGGGCTTATGACGATGATGGCATGCCAAGCTTT
CGCTTAGAAAAACTCACTAAAGCAAATGGTATTGAGCATGAAAATGCCCATGATGCGATGGCGGATGTATATGCAACCAT
CGCTATGGCTAAATTAATCAAAGAAAAGCAGCCTAAATTATTTCAATTCTTCTTTGAGCATAGAGGTAAAAAGGAAATTG
AGAAACTGATCGACACCGCGGAAATGACACCATTAGTGCACGTTTCGGGTATGCTAGGGAATTATCGTGGCAATTGTGCT
TGGGTGGCACCATTAGCATGGCATCCAACTAATCAAAATGCTGTAATCGTCTGTGATTTATCAGGTGATATTGATAACTT
GCTCAGCAAAAGTGCGGTTGATTTACGACAAGATTTATATACCAAGAAAAGTGAGTTAGAAGAAAGAGGTGTTTCATCAG
TTCCATTAAAATTGGTTCATATTAATAAATGCCCAATTTTGGCGCCTGCAAAAACGTTATTGCCAGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACATTGCTTAGATAATTTAGCAAAATTGCGCCAATCCTTAGATATTCGCGAGAAAGTTATTGA
AATCTTCTCAGAAGAACGCGAATTTGAGCCGAGTGATAATGTAGAAACTGAACTTTATAGCGGTTTCTTTAGCAACGCCG
ATAAAAACAACATGGCTATTTTACGCGATTTACCAGCAGAGAAATTAGCTGAGCATGGTTTAGCATTTGAAGATAAACGA
ATTCCAGAATTGTTATTCCATTATCGTGCAAGACATTTCTATAAAACTCTAAATCGTGCAGAGCAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAATGCGGTTAAATTTGAAGAAAGTTTACAGCAGTTAGCAGAGGAATATTCGGATA
ATCCAACCAAACTGAATTTACTGCAACAGGTTTATGAATACGGAGCAAAATTGTTATCTTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(208-469)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

55.794

98.52

0.55