Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   INP94_RS03955 Genome accession   NZ_CP063120
Coordinates   800547..801059 (+) Length   170 a.a.
NCBI ID   WP_197544091.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 795547..806059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS03935 (INP94_03935) psiE 795633..796049 (+) 417 WP_197544087.1 phosphate-starvation-inducible protein PsiE -
  INP94_RS03940 (INP94_03940) - 796085..796930 (-) 846 WP_197544088.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  INP94_RS10930 - 796994..797686 (-) 693 Protein_768 penicillin-binding protein 1A -
  INP94_RS03945 (INP94_03945) - 797762..799612 (-) 1851 Protein_769 penicillin-binding protein 1A -
  INP94_RS03950 (INP94_03950) comA 799712..800560 (+) 849 WP_197544090.1 pilus assembly protein PilM Machinery gene
  INP94_RS03955 (INP94_03955) comB 800547..801059 (+) 513 WP_197544091.1 PilN domain-containing protein Machinery gene
  INP94_RS03960 (INP94_03960) comC 801056..801598 (+) 543 WP_197544092.1 competence protein ComC Machinery gene
  INP94_RS03965 (INP94_03965) - 801598..801981 (+) 384 WP_197544093.1 pilus assembly protein PilP -
  INP94_RS03970 (INP94_03970) comE 801983..803365 (+) 1383 WP_197544094.1 type IV pilus secretin PilQ Machinery gene
  INP94_RS03975 (INP94_03975) - 803385..804074 (+) 690 WP_197544095.1 ComF family protein -
  INP94_RS03980 (INP94_03980) nfuA 804188..804772 (+) 585 WP_005694707.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20365.59 Da        Isoelectric Point: 6.8457

>NTDB_id=436683 INP94_RS03955 WP_197544091.1 800547..801059(+) (comB) [Haemophilus parainfluenzae strain M1C137_2]
MLSLNLLPWRLEQHQKAFRRFMWQGLIWLACSVLIVFGLSHFNEQQAQTLNQIKEKLTQITHQVHQKRIQVQQLQRDLKE
MNELTEMETEYVYRMLNLLTELPLQQGELDVFMLNAKQVVLSGMTENQQEFEAIHQFLKRHFTEVNLTKFQPVQQQLFFQ
FDIHLSGPVQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=436683 INP94_RS03955 WP_197544091.1 800547..801059(+) (comB) [Haemophilus parainfluenzae strain M1C137_2]
ATGTTAAGCCTTAATTTATTGCCTTGGCGCTTAGAACAACATCAAAAGGCTTTTCGCCGTTTTATGTGGCAAGGCTTAAT
TTGGCTAGCTTGCTCAGTTTTGATTGTCTTTGGCTTGAGTCATTTTAATGAACAACAAGCGCAAACCCTAAATCAGATAA
AAGAAAAACTGACACAAATTACTCATCAAGTCCATCAGAAACGCATTCAAGTTCAACAACTACAACGTGACTTGAAAGAA
ATGAATGAGTTGACTGAAATGGAGACGGAATATGTGTATAGAATGCTTAATTTATTAACTGAGTTGCCCTTACAACAAGG
TGAGTTAGATGTATTTATGCTCAATGCTAAGCAAGTTGTCCTTTCTGGCATGACGGAAAATCAACAAGAATTTGAAGCAA
TACATCAATTTCTTAAACGCCATTTTACCGAGGTTAATTTAACCAAGTTTCAACCGGTGCAACAACAGTTATTCTTTCAG
TTTGATATTCATTTATCGGGGCCTGTGCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

40.741

95.294

0.388
  comB Haemophilus influenzae Rd KW20

40.741

95.294

0.388