Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HF394_RS15510 Genome accession   NZ_CP051177
Coordinates   3193592..3195289 (+) Length   565 a.a.
NCBI ID   WP_053166976.1    Uniprot ID   A0A7H8QD57
Organism   Planococcus glaciei strain CNCTC7660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3188592..3200289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF394_RS15485 (HF394_15495) xseB 3189018..3189254 (+) 237 WP_036809260.1 exodeoxyribonuclease VII small subunit -
  HF394_RS15490 (HF394_15500) - 3189251..3190129 (+) 879 WP_036809256.1 polyprenyl synthetase family protein -
  HF394_RS15495 (HF394_15505) dxs 3190221..3192125 (+) 1905 WP_053166974.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HF394_RS15500 (HF394_15510) - 3192122..3192943 (+) 822 WP_036809250.1 TlyA family RNA methyltransferase -
  HF394_RS15505 (HF394_15515) argR 3193126..3193575 (+) 450 WP_036809248.1 transcriptional regulator ArgR -
  HF394_RS15510 (HF394_15520) recN 3193592..3195289 (+) 1698 WP_053166976.1 DNA repair protein RecN Machinery gene
  HF394_RS15515 (HF394_15525) spo0A 3195324..3196082 (+) 759 WP_036809236.1 sporulation transcription factor Spo0A -
  HF394_RS15520 (HF394_15530) - 3196235..3196702 (+) 468 WP_176294859.1 plastocyanin/azurin family copper-binding protein -
  HF394_RS15525 (HF394_15535) - 3196806..3197540 (+) 735 WP_246316525.1 glycerophosphodiester phosphodiesterase family protein -
  HF394_RS15530 (HF394_15540) - 3197609..3197842 (-) 234 WP_036809233.1 DUF2627 domain-containing protein -
  HF394_RS15535 (HF394_15545) - 3197968..3200013 (+) 2046 WP_176294860.1 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63694.33 Da        Isoelectric Point: 4.9913

>NTDB_id=436650 HF394_RS15510 WP_053166976.1 3193592..3195289(+) (recN) [Planococcus glaciei strain CNCTC7660]
MLRELDIRNFAIIDALTVSFTDGLTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAKKAEIEGLFSLDNEKHPVFRK
LDEFGINSSDGDILLRRELNDKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHVYLLDQFAGKSIAKAK
ESYLNTYDKYLKLKREFASYNENEQQIAQKIDLLTFQLREIEAAELVAGEEEELQQERKRLQNFNKIYESVSAAHEAIQG
ESKGLDWVGSAMSELEHAASVDEAFSSQSETLSSAFYQLQDVSTEIKRVIDDMEFDPERLNEIEQRLTLLQSLKRKYGAS
VEDMLLYYETQVDELDRLINRDQRLQLDQEKLKELTEDLRVEAEELTILRKKASKQLGNAIMEQLQALHMGKASFEVNFS
SLPSGRFDRNGRDVIAFYISTNLGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAISVHSQVLCISHLPQVAAMADQHLFIEKKVEKQRTVTAVHELDGQERTEEMSRMLSGAEITELTLQHAEELLTLARDR
KLTMR

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=436650 HF394_RS15510 WP_053166976.1 3193592..3195289(+) (recN) [Planococcus glaciei strain CNCTC7660]
ATGCTGCGGGAACTGGATATACGCAATTTCGCCATTATCGATGCACTGACCGTCAGCTTTACGGATGGATTGACCGTGTT
GACCGGGGAAACCGGCGCCGGCAAATCCATCATCATTGATGCGGTGCATTTATTGGCAGGGGGGCGCGGTAGCCAAGAGT
TTATACGGCACGGCGCTAAAAAAGCAGAAATTGAAGGTCTTTTTTCTCTGGACAATGAAAAACATCCTGTGTTCCGTAAA
CTGGATGAATTTGGAATAAACTCGAGCGACGGCGATATTTTGCTGCGCCGCGAGCTCAACGATAAAGGAAAAAATGTGTG
CCGCATCAACGGGAAACTGGTGACCATTTCGATTCTCCGCGAAGTGGGTGCGGCGTTGATCGATATACACGGCCAGCATG
AAACGCAGGAATTGATGGACGAGAAACAGCATGTCTATTTGCTGGACCAGTTTGCCGGCAAGTCGATTGCCAAAGCGAAA
GAAAGCTATTTGAATACGTACGACAAATACTTGAAGCTGAAGCGGGAATTTGCCTCGTACAATGAAAACGAACAGCAGAT
TGCACAAAAAATCGATTTGCTGACGTTTCAGCTGCGCGAAATCGAAGCCGCTGAATTGGTTGCAGGTGAAGAGGAAGAGC
TGCAGCAGGAACGCAAAAGGCTGCAGAATTTCAACAAAATCTACGAATCGGTATCTGCTGCCCACGAAGCGATCCAAGGC
GAATCCAAAGGCCTGGATTGGGTCGGTTCCGCAATGTCCGAACTCGAACACGCCGCTTCGGTCGACGAAGCCTTCAGCAG
CCAGTCGGAAACCTTATCAAGTGCTTTTTATCAGCTTCAGGATGTCTCCACTGAAATCAAACGTGTAATTGACGACATGG
AGTTTGATCCGGAACGCCTCAATGAAATTGAACAGCGCCTGACGCTGCTTCAATCGTTGAAACGGAAATACGGGGCTTCT
GTAGAGGATATGCTCTTGTACTATGAAACGCAGGTGGATGAACTCGACCGCCTCATCAACCGGGACCAGCGGTTGCAGCT
GGACCAGGAGAAGCTGAAAGAACTTACGGAAGATCTGCGGGTTGAAGCGGAAGAATTGACGATCCTTAGAAAAAAAGCGT
CCAAACAGCTGGGCAATGCCATTATGGAACAACTGCAGGCCTTGCATATGGGCAAAGCGTCGTTTGAAGTGAATTTCAGT
TCGCTGCCGAGTGGCCGCTTTGACCGCAATGGCCGCGATGTAATCGCTTTTTATATTTCAACCAACCTGGGAGAGCCGTT
AAAGCCATTGACCAAAGTGGCTTCCGGCGGAGAGTTGTCGAGGATGATGCTCGCATTAAAAACGATCTTTTCGAAACACC
AGGGCATCACGTCCATCATTTTCGATGAAGTGGATACGGGAGTCAGCGGCCGGGTGGCACAGGCCATTGCCGAGAAAATC
GCTGCAATTTCCGTCCATTCGCAAGTGCTGTGCATTTCGCATCTGCCGCAAGTAGCAGCGATGGCGGACCAGCATTTGTT
CATCGAAAAGAAAGTGGAAAAACAGCGCACGGTCACTGCCGTCCACGAATTGGATGGCCAGGAACGCACGGAAGAAATGA
GCCGCATGCTGTCCGGCGCAGAAATTACGGAATTGACATTGCAACATGCCGAAGAATTGTTGACGTTGGCGCGCGACAGA
AAACTGACGATGAGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8QD57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.562

100

0.526