Detailed information NTG0436645

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INP95_RS07425
• Genome accession: NZ_CP063117
• Coordinates: 1531355..1532776 (+)
• Length: 473 a.a.
• NCBI ID: WP_197560441.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C142_1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1526355..1537776

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP95_RS07420 (INP95_07415)	-	1530480..1531352 (+)	873	WP_007243099.1	DMT family transporter	-
INP95_RS07425 (INP95_07420)	sbcB	1531355..1532776 (+)	1422	WP_197560441.1	exodeoxyribonuclease I	Machinery gene
INP95_RS07430 (INP95_07425)	ftnA	1533546..1534031 (+)	486	WP_005699391.1	non-heme ferritin	-
INP95_RS07435 (INP95_07430)	ftnA	1534052..1534552 (+)	501	WP_005698992.1	non-heme ferritin	-
INP95_RS07445 (INP95_07440)	ttcA	1534880..1535809 (+)	930	WP_197560442.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
INP95_RS07450 (INP95_07445)	-	1535811..1536140 (+)	330	WP_070592098.1	TusE/DsrC/DsvC family sulfur relay protein	-
INP95_RS07455 (INP95_07450)	-	1536247..1537233 (+)	987	WP_197560443.1	FecCD family ABC transporter permease	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54505.80 Da
• Isoelectric Point: 4.9778

>NTDB_id=436645 INP95_RS07425 WP_197560441.1 1531355..1532776(+) (sbcB) [Haemophilus parainfluenzae strain M1C142_1]
MANDFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVTGITPQECNEKGISEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLVDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQQCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYNGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAVKFEESLQQLAEEYSDNPTKLNLLQQVYEYGVKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=436645 INP95_RS07425 WP_197560441.1 1531355..1532776(+) (sbcB) [Haemophilus parainfluenzae strain M1C142_1]
ATGGCAAACGATTTTAGTTTTTTTATCTACGATTATGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCAGCTCAATT
TGCCGGTATTCGTACCGATGCAGATTTTAATATTATTGGCGAGCCTGTTATGTTGTATTGCAAGCAAACCAATGATTATT
TGCCCGCACCGGAAGCCGTAATGGTCACAGGAATCACGCCACAAGAATGTAATGAAAAGGGGATTTCAGAACCTGAATTT
GCCGCAAAAATTCTAGCTGAGTTTTCACAACCTAATACTTGTGTGATGGGTTACAACAACATTCGTTATGACGATGAAAT
GACTCGTTATACCTTTTACCGTAACTTCATCGATCCCTATGAATATAGCTGGAAAAATGGCAATTCTCGTTGGGATTTAC
TGGATTTGGTCCGGGCTTGCTATGCATTGCGTCCAGAGGGAATTAATTGGGCTTATGACGATGATGGTATGCCAAGCTTT
CGCTTAGAAAAACTAACCAAAGCAAATGGTATTGAGCATGAAAATGCCCATGATGCGATGGCGGATGTGTATGCAACCAT
CGCCATGGCTAAATTGATCAAAGAAAAACAGCCTAAATTATTTCAATTCTTCTTTGAGCATAGAGGTAAAAAGGAAATTG
AGAAACTGGTCGACACTGCGGAAATGACACCATTAGTGCACGTTTCGGGCATGCTAGGCAATTATCGCGGCAATTGTGCT
TGGGTGGCACCATTAGCATGGCATCCAACTAATCAAAATGCCGTAATCGTCTGTGATTTATCAGGTGATATTGATAATTT
ACTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGTGAGCTAGAAGAAAGGGGAGTTTCATCAG
TTCCATTAAAATTGGTTCATATTAATAAATGCCCAATTTTGGCGCCTGCAAAAACATTACTGCCAGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACAATGCTTAGATAATTTAGCAAAATTGCGCCAATCCTTAGATATACGCGAGAAAGTTATTGA
AATCTTCTCAGAAGAACGAGAATTTGAGCCGAGTGATAATGTAGAAACGGAACTTTATAACGGTTTCTTTAGCAATGCGG
ATAAAAACAATATGGCTATTTTACGGGATTTACCGGCCGAGAAATTAGCTGAACATGGTTTAGCATTTGAAGATAAACGA
ATTCCTGAATTGTTATTCCATTATCGTGCCAGACATTTCTATAAAACTCTAAATCGTGCAGAGCAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTGCGGTTAAATTTGAAGAAAGTTTACAACAGTTAGCAGAGGAATATTCGGATA
ATCCAACCAAGTTAAATTTACTACAACAGGTTTATGAATACGGTGTAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-468)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.794	98.52	0.55