Detailed information    

insolico Bioinformatically predicted

Overview

Name   rocC   Type   Regulator
Locus tag   LPV_RS00685 Genome accession   NC_018140
Coordinates   159785..160477 (+) Length   230 a.a.
NCBI ID   WP_014843076.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   rocR chaperone; repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 154785..165477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPV_RS15635 (LPV_0146) - 155406..155582 (-) 177 WP_011945326.1 dodecin domain-containing protein -
  LPV_RS00670 (LPV_0148) - 155760..158228 (+) 2469 WP_014843073.1 hypothetical protein -
  LPV_RS00675 (LPV_0149) dapB 158332..159063 (-) 732 WP_014843074.1 4-hydroxy-tetrahydrodipicolinate reductase -
  LPV_RS00680 (LPV_0150) - 159243..159428 (-) 186 WP_014843075.1 hypothetical protein -
  LPV_RS00685 (LPV_0151) rocC 159785..160477 (+) 693 WP_014843076.1 ProQ/FinO family protein Regulator
  LPV_RS00690 (LPV_0152) - 160478..161545 (+) 1068 WP_014843077.1 hypothetical protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25801.66 Da        Isoelectric Point: 10.6432

>NTDB_id=43664 LPV_RS00685 WP_014843076.1 159785..160477(+) (rocC) [Legionella pneumophila subsp. pneumophila]
MRKQALHPRTAVINKAQKNQSKRARSDALSWLAANFPEAFDNSLRIRPLKIGIMSDILQHAEKAEQVGISKSKLREAVVL
FTRRLDYLACLKAREVRIDLHGNPVEEVTEEEAEHASMKIKKRVEKSVKNARKLVNAKAANHSHVNNQPSTVSSVKPMNS
FDSHPEPLLPIYPLRSSTYASQNVAMQSAKSPSVVVKHKAPKQYDPDAVARLKEKLGLSRKAEDKKETTE

Nucleotide


Download         Length: 693 bp        

>NTDB_id=43664 LPV_RS00685 WP_014843076.1 159785..160477(+) (rocC) [Legionella pneumophila subsp. pneumophila]
ATGAGAAAGCAGGCGCTGCACCCACGAACCGCTGTCATCAATAAAGCACAAAAAAATCAATCCAAGCGTGCGCGATCTGA
CGCATTATCATGGCTTGCGGCTAATTTCCCTGAGGCATTCGATAATTCTTTGCGTATTCGGCCATTAAAGATTGGTATTA
TGTCTGATATATTGCAGCATGCAGAAAAAGCAGAGCAAGTTGGAATTTCTAAAAGTAAATTAAGGGAAGCTGTTGTTCTT
TTTACCCGTCGTCTTGATTATCTGGCTTGCCTGAAAGCTCGTGAAGTCCGTATCGATTTGCACGGAAATCCAGTAGAGGA
GGTTACTGAGGAAGAAGCGGAACATGCTTCCATGAAAATTAAAAAACGCGTGGAAAAGAGTGTTAAAAATGCTCGCAAAC
TAGTGAATGCAAAAGCGGCTAATCATTCGCATGTAAATAATCAGCCAAGTACAGTTTCCAGCGTTAAGCCAATGAATTCG
TTTGACTCTCATCCTGAGCCTCTTTTGCCAATATATCCTCTCAGAAGCTCTACCTATGCCTCACAAAATGTGGCAATGCA
ATCCGCCAAGTCACCATCCGTAGTAGTCAAACATAAAGCACCAAAGCAATATGATCCGGATGCTGTAGCCCGTTTAAAAG
AAAAATTAGGATTGTCTCGAAAAGCAGAAGATAAAAAGGAAACAACAGAGTAA

Domains

Predicted by InterProScan.

ProQ/FINO family (ProQ)

(26-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rocC Legionella pneumophila str. Paris

97.391

100

0.974

Multiple sequence alignment