Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HF394_RS09380 Genome accession   NZ_CP051177
Coordinates   1942654..1943604 (+) Length   316 a.a.
NCBI ID   WP_053166043.1    Uniprot ID   A0A7H8Q9Z1
Organism   Planococcus glaciei strain CNCTC7660     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1937654..1948604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF394_RS09365 (HF394_09370) hflX 1938166..1939437 (+) 1272 WP_176294465.1 GTPase HflX -
  HF394_RS09370 (HF394_09375) - 1939667..1941388 (-) 1722 WP_176294466.1 ABC transporter ATP-binding protein -
  HF394_RS09375 (HF394_09380) - 1941562..1942422 (+) 861 WP_036807654.1 DUF6612 family protein -
  HF394_RS09380 (HF394_09385) ceuB 1942654..1943604 (+) 951 WP_053166043.1 ABC transporter permease Machinery gene
  HF394_RS09385 (HF394_09390) - 1943597..1944547 (+) 951 WP_036807648.1 iron chelate uptake ABC transporter family permease subunit -
  HF394_RS09390 (HF394_09395) - 1944544..1945305 (+) 762 WP_036807645.1 ATP-binding cassette domain-containing protein -
  HF394_RS09395 (HF394_09400) - 1945416..1946372 (+) 957 WP_036807642.1 siderophore ABC transporter substrate-binding protein -
  HF394_RS09400 (HF394_09405) - 1946617..1947684 (+) 1068 WP_036807639.1 ABC transporter permease -
  HF394_RS09405 (HF394_09410) - 1947688..1948359 (+) 672 WP_036807636.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34811.99 Da        Isoelectric Point: 9.9779

>NTDB_id=436639 HF394_RS09380 WP_053166043.1 1942654..1943604(+) (ceuB) [Planococcus glaciei strain CNCTC7660]
MKKRYLIPALIILSVISLFVGVSSISITDLFDFQSEETQIFLISRLPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMTVAFAFALAGTFLFMKILDRIKFKDAIFIPLVGLMFGNILSSVTTFFAYRADVI
QNMSAWLQGDFSMIMKGSYELLYISVPVFVIAYFYANRFTVAGMGEDFSKNLGMKYRSVVNIGLTLVALITATVVLTVGM
IPFLGLIIPNIISIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEISISLMVGVIGSFIFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=436639 HF394_RS09380 WP_053166043.1 1942654..1943604(+) (ceuB) [Planococcus glaciei strain CNCTC7660]
ATGAAAAAAAGATATTTAATACCAGCATTAATCATACTGTCTGTTATTTCGCTGTTTGTCGGAGTAAGCAGTATCAGTAT
CACCGATCTGTTTGACTTCCAATCGGAAGAAACACAAATATTCCTGATCAGCCGACTGCCAAGGCTGGTTGCGATTTTGC
TGGCAGGTGCGGGAATGAGTATGGCAGGACTCATCATGCAGCAGTTAAGCCGCAATAAGTTTGTGTCTCCTACGACGGCA
GGTACATTAGATGCTACAAGGCTTGGGATTCTCGTTTCGATGCTATTGTTCGCCAATGCATCGATGCTCGAGAAAATGAC
GGTAGCATTCGCTTTTGCACTTGCCGGAACGTTTCTATTCATGAAAATTCTTGACCGCATCAAATTTAAAGATGCTATAT
TCATTCCGCTTGTCGGATTAATGTTCGGAAACATTCTTTCTTCGGTCACGACATTCTTCGCTTACCGCGCAGACGTTATC
CAAAACATGTCAGCTTGGCTGCAAGGCGATTTCTCGATGATCATGAAAGGAAGCTACGAACTGCTTTATATCAGTGTTCC
GGTCTTTGTCATCGCTTATTTTTATGCCAACCGCTTCACGGTTGCCGGGATGGGAGAAGACTTCTCCAAAAACCTGGGGA
TGAAATACCGGAGCGTGGTGAACATCGGCTTGACGCTGGTGGCGCTGATTACGGCAACGGTCGTGTTAACGGTCGGCATG
ATTCCGTTCTTGGGGTTGATCATCCCGAACATCATTTCGATTTTCAAAGGTGACCATCTTCAAAAAACTTTGCCGCATAC
GGCGATGCTTGGAGCTATCTTCTTGCTGGTATGCGATATTTTAGGAAGAGTATTAATTTACCCGTATGAAATTTCCATCA
GCTTAATGGTCGGTGTCATCGGAAGCTTTATTTTCCTCTTCTTATTGTTTAGGGGGAAAGCATATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8Q9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.396

99.051

0.519