Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HF394_RS07415 Genome accession   NZ_CP051177
Coordinates   1576720..1578096 (+) Length   458 a.a.
NCBI ID   WP_036803828.1    Uniprot ID   A0A1G8L2H3
Organism   Planococcus glaciei strain CNCTC7660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1571720..1583096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF394_RS07395 (HF394_07400) - 1572115..1572585 (+) 471 WP_036803818.1 CtsR family transcriptional regulator -
  HF394_RS07400 (HF394_07405) - 1572597..1573130 (+) 534 WP_036803820.1 UvrB/UvrC motif-containing protein -
  HF394_RS07405 (HF394_07410) - 1573120..1574211 (+) 1092 WP_176294361.1 protein arginine kinase -
  HF394_RS07410 (HF394_07415) clpC 1574208..1576655 (+) 2448 WP_036803827.1 ATP-dependent protease ATP-binding subunit ClpC -
  HF394_RS07415 (HF394_07420) radA 1576720..1578096 (+) 1377 WP_036803828.1 DNA repair protein RadA Machinery gene
  HF394_RS07420 (HF394_07425) - 1578200..1579303 (+) 1104 WP_036803829.1 PIN/TRAM domain-containing protein -
  HF394_RS07425 (HF394_07430) ispD 1579317..1580012 (+) 696 WP_053167073.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HF394_RS07430 (HF394_07435) ispF 1580009..1580509 (+) 501 WP_053167075.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  HF394_RS07435 (HF394_07440) gltX 1580550..1582013 (+) 1464 WP_053167077.1 glutamate--tRNA ligase -
  HF394_RS07440 (HF394_07445) cysE 1582348..1583010 (+) 663 WP_036803837.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49930.39 Da        Isoelectric Point: 6.9616

>NTDB_id=436637 HF394_RS07415 WP_036803828.1 1576720..1578096(+) (radA) [Planococcus glaciei strain CNCTC7660]
MAKKKTKFICQSCGYESVKWMGKCPGCGEWNQMVEEVEVAAPKGTRGAFQHSATVSQKATPINSIKTQEEPRVETKMGEL
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAMLANSGSRVLYISGEESIRQTKLRAERLDASSSELYIYAETNLELIH
HTIEEVAPDFVVVDSIQTVHHPEVTSAPGSVTQVRESTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLYF
EGERHHTYRILRSVKNRFGSTNEIAIFEMLQSGLKEVLNPSELFLQERSSGAAGSTVVASMEGTRPILVEIQALVTPSSF
NYPKRMATGIDQNRVSLIMAVLEKRAGMLLQAQDAYIKVAGGVKLDEPAIDLAVLASIVSSYRDKAPNVYDCIIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRAIVPASNLGGWDYPEGIRVIGVESVNDALKEIFPQ

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=436637 HF394_RS07415 WP_036803828.1 1576720..1578096(+) (radA) [Planococcus glaciei strain CNCTC7660]
ATGGCTAAGAAAAAAACGAAGTTTATTTGCCAATCGTGCGGTTATGAGTCAGTGAAATGGATGGGCAAATGCCCTGGATG
CGGCGAGTGGAACCAGATGGTCGAGGAAGTAGAAGTGGCAGCTCCTAAAGGAACGCGCGGTGCCTTCCAGCATTCCGCTA
CTGTTTCCCAAAAAGCGACGCCGATCAACTCGATTAAAACCCAGGAAGAACCGCGCGTAGAGACGAAAATGGGCGAGTTG
AACCGTGTGCTTGGCGGCGGCATTGTGCCGGGTTCACTGGTATTAATCGGTGGAGACCCGGGAATCGGGAAATCCACCTT
GCTGCTTCAAGTTTCGGCAATGCTGGCCAATAGCGGCAGCCGCGTCTTGTATATTTCAGGAGAAGAATCCATCCGCCAAA
CCAAGTTGCGTGCAGAACGATTGGATGCGTCTTCTTCGGAATTGTATATCTATGCAGAAACCAATCTGGAATTGATTCAC
CATACCATAGAAGAAGTAGCGCCTGATTTTGTGGTAGTTGACTCTATCCAAACGGTCCATCACCCGGAAGTGACTTCAGC
ACCGGGAAGCGTGACGCAAGTCCGGGAAAGTACAGCAGAATTGATGCGCATTGCGAAAACAAAAAATATCGCGATTTTCC
TGGTTGGCCACGTTACGAAAGAAGGGCAGATTGCAGGTCCGCGGATTCTTGAGCATATGGTGGATACCGTGCTTTATTTT
GAAGGCGAGCGCCATCATACGTACCGTATTTTGCGCAGCGTGAAAAACCGCTTTGGTTCAACGAATGAAATTGCGATTTT
TGAGATGCTGCAAAGCGGCTTGAAAGAAGTCTTGAATCCGTCGGAGCTGTTTTTGCAGGAGCGGTCGAGCGGTGCAGCAG
GGTCGACGGTTGTCGCTTCGATGGAAGGGACCCGTCCGATTCTCGTGGAGATTCAGGCATTGGTCACGCCTTCAAGCTTC
AATTATCCGAAACGGATGGCAACAGGAATTGATCAAAACCGTGTTTCGCTGATCATGGCGGTGCTGGAAAAACGCGCAGG
TATGCTTTTGCAGGCACAGGATGCTTATATCAAAGTGGCCGGCGGCGTGAAGCTTGACGAACCGGCAATCGATTTGGCGG
TGCTTGCAAGCATTGTTTCAAGCTACCGCGACAAAGCGCCGAATGTGTATGACTGCATCATCGGAGAAGTCGGGCTAACA
GGTGAAGTGCGCCGGGTCTCGCGGATTGAACAGCGGGTCCAGGAAGCAGCAAAACTTGGGTTTAAACGCGCGATTGTTCC
TGCTTCCAACTTAGGCGGCTGGGATTATCCGGAAGGCATTCGGGTCATTGGCGTTGAAAGTGTAAATGATGCATTAAAAG
AAATTTTTCCACAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(358-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G8L2H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.068

98.908

0.723
  radA Streptococcus pneumoniae Rx1

63.816

99.563

0.635
  radA Streptococcus pneumoniae D39

63.816

99.563

0.635
  radA Streptococcus pneumoniae R6

63.816

99.563

0.635
  radA Streptococcus pneumoniae TIGR4

63.816

99.563

0.635
  radA Streptococcus mitis NCTC 12261

63.816

99.563

0.635
  radA Streptococcus mitis SK321

63.816

99.563

0.635