Detailed information NTG0436613

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HF906_RS14840
• Genome accession: NZ_CP051175
• Coordinates: 3179987..3181114 (+)
• Length: 375 a.a.
• NCBI ID: WP_003269901.1
• Uniprot ID: -
• Organism: Ralstonia solanacearum strain Rs5
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3174987..3186114

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF906_RS14815 (HF906_14855)	-	3175354..3175602 (-)	249	WP_003262548.1	YfhL family 4Fe-4S dicluster ferredoxin	-
HF906_RS14820 (HF906_14860)	coaD	3175653..3176159 (-)	507	WP_003262550.1	pantetheine-phosphate adenylyltransferase	-
HF906_RS14825 (HF906_14865)	rsmD	3176355..3177011 (-)	657	WP_119446894.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HF906_RS14830 (HF906_14870)	-	3177090..3178433 (-)	1344	WP_003269898.1	M16 family metallopeptidase	-
HF906_RS14835 (HF906_14875)	-	3178433..3179926 (-)	1494	WP_193010232.1	M16 family metallopeptidase	-
HF906_RS14840 (HF906_14880)	pilA	3179987..3181114 (+)	1128	WP_003269901.1	signal recognition particle-docking protein FtsY	Machinery gene
HF906_RS14845 (HF906_14885)	maiA	3181232..3181882 (-)	651	WP_141515171.1	maleylacetoacetate isomerase	-
HF906_RS14850 (HF906_14890)	-	3181886..3182587 (-)	702	WP_003269903.1	fumarylacetoacetate hydrolase family protein	-
HF906_RS14855 (HF906_14895)	-	3182738..3183364 (+)	627	WP_003269904.1	ANTAR domain-containing response regulator	-
HF906_RS14860 (HF906_14900)	-	3183643..3184905 (+)	1263	WP_043892164.1	CmpA/NrtA family ABC transporter substrate-binding protein	-
HF906_RS14865 (HF906_14905)	ntrB	3184955..3185806 (+)	852	WP_043892169.1	nitrate ABC transporter permease	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 39938.18 Da
• Isoelectric Point: 6.1623

>NTDB_id=436613 HF906_RS14840 WP_003269901.1 3179987..3181114(+) (pilA) [Ralstonia solanacearum strain Rs5]
MFSFWKKRKAEPQPAAEPAPPAAAPEAAQAPAPVPVASPTPAPAPVAVPDTPAAPAALDMQADDIETVPTPPVVEQARKG
WMSRLRSGLSKTSKSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLNELRRRVKAQRIETAESVKTALRDLLIEL
LHPLEKTMVLGRDQPMVIMIAGVNGAGKTTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQESGD
PAAVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMVTAPHETLLVIDANTGQNALAQVKAFDDTLG
LTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALLG

Nucleotide

• Length: 1128 bp

>NTDB_id=436613 HF906_RS14840 WP_003269901.1 3179987..3181114(+) (pilA) [Ralstonia solanacearum strain Rs5]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCAGAGCCCCAGCCGGCCGCCGAACCCGCGCCGCCCGCCGCCGCGCCCGAAGC
CGCCCAGGCCCCGGCACCGGTCCCGGTTGCCTCCCCCACCCCTGCACCCGCCCCGGTTGCCGTGCCGGATACGCCGGCCG
CGCCGGCTGCGCTGGACATGCAGGCCGACGACATCGAGACCGTACCGACGCCGCCCGTGGTGGAGCAGGCGCGCAAGGGC
TGGATGTCGCGCCTGCGCTCGGGCCTGTCGAAGACCAGCAAGAGCCTGACCACGCTGTTCGTCGGCGTGAAGGTGGACGA
GGCGCTGTTCGAGGAACTGGAGACCGCGCTGCTGATGGCCGATGCCGGCGTGGATGCCACCGAATACCTGCTGAACGAGC
TGCGCCGCCGCGTGAAGGCCCAGCGCATCGAGACCGCCGAGAGCGTGAAGACCGCGCTGCGCGATCTGCTCATCGAGCTG
CTGCATCCGCTGGAAAAAACCATGGTGCTCGGCCGCGACCAGCCGATGGTGATCATGATTGCGGGCGTCAACGGTGCCGG
CAAGACCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGACCTACGGGCAGTCCGTGCTGCTGGCTGCCGGCGACACGT
TCCGCGCCGCCGCCCGCGAGCAACTGGTGATCTGGGGCCAGCGCAACAACGTGACCGTGGTGGCACAGGAGTCGGGCGAC
CCGGCCGCCGTGATCTTCGACGCGGTGAACGCGGCGCGCGCCCGCGGCATCGACATCGTCATGGCCGACACCGCCGGCCG
CCTGCCGACCCAGTTGCACCTGATGGAAGAACTGAAGAAGGTGCGCCGCGTGATCGGCAAGGCCATGGTGACGGCGCCGC
ACGAGACCCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTGGCGCAGGTGAAGGCCTTCGACGATACGCTCGGC
CTGACCGGCCTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGGCCGCCATCGCGCGGCAGCGGCCGGT
GCCGGTGTATTTCATCGGTGTGGGCGAGCAGGTCGAAGACCTGCAACCGTTCTCCGCGCGCGAATTCGCCGACGCGCTGC
TGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (175-375)

• SRP54-type protein, helical bundle domain (SRP54_N) (94-155)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.442	100	0.571