Detailed information NTG0436583

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INP96_RS07100
• Genome accession: NZ_CP063116
• Coordinates: 1456556..1457977 (+)
• Length: 473 a.a.
• NCBI ID: WP_197555618.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C146_1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1451556..1462977

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP96_RS07095 (INP96_07090)	-	1455681..1456553 (+)	873	WP_197555617.1	DMT family transporter	-
INP96_RS07100 (INP96_07095)	sbcB	1456556..1457977 (+)	1422	WP_197555618.1	exodeoxyribonuclease I	Machinery gene
INP96_RS07105 (INP96_07100)	ftnA	1458749..1459234 (+)	486	WP_049366579.1	non-heme ferritin	-
INP96_RS07110 (INP96_07105)	ftnA	1459255..1459755 (+)	501	WP_005696114.1	non-heme ferritin	-
INP96_RS07120 (INP96_07115)	ttcA	1460095..1461024 (+)	930	WP_070582420.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
INP96_RS07125 (INP96_07120)	-	1461026..1461355 (+)	330	WP_197555619.1	TusE/DsrC/DsvC family sulfur relay protein	-
INP96_RS07130 (INP96_07125)	-	1461555..1461764 (+)	210	WP_070582418.1	TOBE domain-containing protein	-
INP96_RS07135 (INP96_07130)	-	1462012..1462272 (+)	261	WP_049365500.1	SemiSWEET family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54583.99 Da
• Isoelectric Point: 5.2008

>NTDB_id=436583 INP96_RS07100 WP_197555618.1 1456556..1457977(+) (sbcB) [Haemophilus parainfluenzae strain M1C146_1]
MANDFSFFIYDYESFGINPANDRPAQFAGIRTDADFNIIGEPIMLYCKQTNDYLPAPEAIIVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMLSF
RLEKLTKANGIEHKNAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQQCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYNGFFSNADKNNMAILRDLSPEKLADHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAVKFEESLQRLAEEYSDNPTKLNLLQQVYEYGAKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=436583 INP96_RS07100 WP_197555618.1 1456556..1457977(+) (sbcB) [Haemophilus parainfluenzae strain M1C146_1]
ATGGCAAACGATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAATGATCGTCCTGCTCAATT
TGCTGGTATTCGTACCGATGCAGATTTCAATATTATTGGTGAGCCTATTATGTTGTATTGTAAGCAAACCAATGATTATT
TACCCGCTCCGGAAGCCATAATTGTCACAGGAATCACGCCACAAGAATGTAATGAAAAGGGGATTCCTGAGCCTGAATTT
GCCGCAAAAATTCTAGCTGAGTTTTCACAACCTAATACTTGTGTGATGGGTTACAACAACATTCGTTATGACGATGAAAT
GACGCGTTATACCTTTTACCGTAACTTCATCGATCCCTATGAATATAGCTGGAAAAATGGCAATTCTCGTTGGGATTTAC
TGGATTTGGTACGAGCCTGCTATGCTTTGCGTCCAGAGGGAATTAATTGGGCTTATGACGATGATGGTATGCTAAGCTTT
CGCTTAGAAAAACTAACCAAAGCAAATGGTATTGAGCATAAAAATGCCCATGATGCGATGGCGGATGTGTATGCAACCAT
CGCTATGGCTAAATTAATCAAAGAAAAGCAGCCTAAATTATTTCAATTCTTCTTTGAGCATAGAGGTAAAAAGGAAATTG
AGAAACTGATTGATACCGCGGAAATGACACCATTAGTGCACGTTTCGGGCATGCTAGGGAATTATCGTGGCAATTGTGCT
TGGGTGGCACCATTAGCATGGCATCCAACTAATCAAAATGCCGTAATCGTCTGTGATTTATCAGGTGATATTGATAATTT
ACTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGCGAGCTAGAAGAAAGGGGAGTTTCATCAG
TTCCATTAAAATTAGTTCATATTAATAAATGCCCAATTTTGGCGCCTGCAAAAACGTTACTACCAGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACAATGCTTAGATAATTTAGCAAAATTGCGCCAATCCTTAGATATTCGTGAGAAAGTTATTGA
AATTTTCTCGGAAGAACGCGAATTTGAGCCGAGTGATAATGTAGAAACTGAACTTTATAACGGTTTCTTTAGCAATGCCG
ATAAAAACAATATGGCTATTTTACGTGATTTATCACCTGAAAAATTAGCTGATCATGGTTTAGCATTTGAAGATAAACGA
ATTCCTGAATTGTTATTCCATTATCGTGCAAGACATTTCTACAAAACCCTAAATCGTGCTGAGCAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTGCGGTTAAATTTGAGGAAAGTTTACAACGATTAGCTGAGGAATATTCGGATA
ATCCAACCAAACTGAATTTACTGCAACAGGTTTATGAATACGGAGCAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-469)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	56.223	98.52	0.554