Detailed information NTG0436569

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: HF908_RS16275
• Genome accession: NZ_CP051171
• Coordinates: 3438669..3439808 (+)
• Length: 379 a.a.
• NCBI ID: WP_193026599.1
• Uniprot ID: -
• Organism: Ralstonia pseudosolanacearum strain RUN2279
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3433669..3444808

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HF908_RS16250 (HF908_16380)	-	3434025..3434273 (-)	249	WP_011000353.1	YfhL family 4Fe-4S dicluster ferredoxin	-
HF908_RS16255 (HF908_16385)	coaD	3434324..3434830 (-)	507	WP_003262550.1	pantetheine-phosphate adenylyltransferase	-
HF908_RS16260 (HF908_16390)	rsmD	3435026..3435673 (-)	648	WP_193026596.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
HF908_RS16265 (HF908_16395)	-	3435754..3437097 (-)	1344	WP_193026597.1	M16 family metallopeptidase	-
HF908_RS16270 (HF908_16400)	-	3437097..3438608 (-)	1512	WP_193026598.1	M16 family metallopeptidase	-
HF908_RS16275 (HF908_16405)	pilA	3438669..3439808 (+)	1140	WP_193026599.1	signal recognition particle-docking protein FtsY	Machinery gene
HF908_RS16280 (HF908_16410)	-	3439805..3440443 (-)	639	WP_020749764.1	LysE/ArgO family amino acid transporter	-
HF908_RS16285 (HF908_16415)	maiA	3440440..3441090 (-)	651	WP_193026600.1	maleylacetoacetate isomerase	-
HF908_RS16290 (HF908_16420)	-	3441094..3441795 (-)	702	WP_064050376.1	fumarylacetoacetate hydrolase family protein	-
HF908_RS16295 (HF908_16425)	-	3441943..3442569 (+)	627	WP_193026601.1	ANTAR domain-containing response regulator	-
HF908_RS16300 (HF908_16430)	-	3442846..3444108 (+)	1263	WP_020749769.1	CmpA/NrtA family ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 40171.39 Da
• Isoelectric Point: 5.8101

>NTDB_id=436569 HF908_RS16275 WP_193026599.1 3438669..3439808(+) (pilA) [Ralstonia pseudosolanacearum strain RUN2279]
MFSFWKKRKAEPQPAAEPAPPAAAPEAAQAPAPAPAPVAAPVPTPAPAPVAVPDTPAAPAALDMQADDIETVPTPPVVEQ
ARKGWMSRLRSGLSKTSKSLTTLFVGVKVDEALFEELETALLMADAGVDATEYLLDELRRRVKAQRIETAEGVKTALRDL
LIELLHPLEKTMVLGRDQPTVIMIAGVNGAGKTTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQ
ESGDPAAVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKAFD
DTLGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALLG

Nucleotide

• Length: 1140 bp

>NTDB_id=436569 HF908_RS16275 WP_193026599.1 3438669..3439808(+) (pilA) [Ralstonia pseudosolanacearum strain RUN2279]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCAGAGCCCCAGCCGGCTGCCGAACCGGCGCCGCCCGCCGCCGCACCCGAAGC
CGCACAGGCTCCTGCCCCGGCCCCAGCCCCGGTTGCCGCCCCCGTCCCCACGCCGGCGCCCGCCCCGGTCGCCGTGCCGG
ATACGCCGGCCGCGCCGGCTGCGCTGGACATGCAGGCCGACGACATCGAGACCGTGCCGACGCCGCCCGTGGTGGAGCAG
GCACGCAAGGGCTGGATGTCGCGCCTGCGCTCGGGCCTGTCGAAGACCAGCAAGAGCCTGACCACGCTGTTCGTCGGCGT
GAAGGTGGACGAGGCGCTGTTCGAGGAGCTGGAGACCGCGCTGCTGATGGCCGATGCCGGTGTCGATGCCACCGAATACC
TGCTGGACGAACTGCGCCGCCGCGTGAAGGCCCAGCGCATCGAGACCGCCGAGGGCGTGAAGACCGCGCTGCGCGACCTG
CTCATCGAGCTGCTGCATCCGCTCGAAAAGACCATGGTGCTCGGCCGCGACCAGCCGACGGTGATCATGATCGCGGGCGT
CAACGGCGCCGGCAAGACCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGACCTATGGACAGTCCGTGCTGCTGGCCG
CCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGTGATCTGGGGCCAGCGCAACAACGTGACCGTGGTGGCGCAG
GAATCGGGCGACCCGGCCGCCGTGATCTTCGACGCGGTGAACGCGGCGCGTGCCCGCGGCATCGACATCGTCATGGCCGA
CACCGCCGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGCGCCGCGTGATCGGCAAGGCGATGG
CGACCGCGCCGCACGAGACCCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTGGCGCAGGTGAAAGCCTTCGAC
GATACGCTCGGCCTGACCGGCCTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGGCCGCCATCGCGCG
GCAGCGGCCGGTACCGGTGTATTTCATCGGCGTGGGCGAGCAGGTGGAAGACCTGCAGCCGTTCTCCGCGCGCGAGTTCG
CCGACGCGCTGCTGGGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (179-379)

• SRP54-type protein, helical bundle domain (SRP54_N) (98-159)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.923	100	0.57