Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LPO_RS13430 Genome accession   NC_018139
Coordinates   2980793..2981584 (-) Length   263 a.a.
NCBI ID   WP_014842650.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2975793..2986584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPO_RS13420 (LPO_2861) legS1 2976939..2978096 (-) 1158 WP_014842647.1 Dot/Icm T4SS effector LegS1 -
  LPO_RS13425 (LPO_2863) dacB 2978908..2980701 (-) 1794 WP_014842649.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  LPO_RS13430 (LPO_2864) spo0J 2980793..2981584 (-) 792 WP_014842650.1 ParB/RepB/Spo0J family partition protein Regulator
  LPO_RS13435 (LPO_2866) ceg33 2981701..2982198 (-) 498 WP_014842651.1 Dot/Icm T4SS effector Ceg33 -
  LPO_RS13440 (LPO_2867) - 2982371..2983120 (-) 750 WP_014842652.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  LPO_RS13445 (LPO_2868) rsmB 2983117..2984400 (-) 1284 WP_014842653.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  LPO_RS13450 (LPO_2869) fmt 2984397..2985341 (-) 945 WP_014842654.1 methionyl-tRNA formyltransferase -
  LPO_RS13455 (LPO_2870) def 2985338..2985850 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30073.19 Da        Isoelectric Point: 5.9797

>NTDB_id=43650 LPO_RS13430 WP_014842650.1 2980793..2981584(-) (spo0J) [Legionella pneumophila subsp. pneumophila]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQVIGEEWSVRHLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=43650 LPO_RS13430 WP_014842650.1 2980793..2981584(-) (spo0J) [Legionella pneumophila subsp. pneumophila]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCTTTGGTGGTAAGACCCATAGCAAAAGAGC
GATATGAAATTATTGCAGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATTGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACTTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTGTTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAGCAAGAAATGTTTGCTCATCAGGTTATTGGAGAGGAATGGTCTGT
CAGACACTTAGAGCAAGAAATTAAATCCTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.308

98.859

0.369

Multiple sequence alignment