Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HF313_RS29315 Genome accession   NZ_CP051166
Coordinates   6836816..6837217 (-) Length   133 a.a.
NCBI ID   WP_126076625.1    Uniprot ID   -
Organism   Massilia atriviolacea strain SOD     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6831816..6842217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HF313_RS29300 (HF313_29220) - 6833532..6835847 (-) 2316 WP_229427262.1 methyl-accepting chemotaxis protein -
  HF313_RS29305 (HF313_29225) - 6835892..6836425 (-) 534 WP_229427263.1 chemotaxis protein CheW -
  HF313_RS29310 (HF313_29230) - 6836429..6836800 (-) 372 WP_126076624.1 response regulator transcription factor -
  HF313_RS29315 (HF313_29235) pilG 6836816..6837217 (-) 402 WP_126076625.1 PleD family two-component system response regulator Regulator
  HF313_RS29320 (HF313_29240) - 6837323..6837475 (-) 153 WP_126076659.1 rubredoxin -
  HF313_RS29325 (HF313_29245) - 6837584..6838429 (+) 846 WP_126076626.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  HF313_RS29330 (HF313_29250) hemL 6838426..6839715 (+) 1290 WP_126076627.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HF313_RS29335 (HF313_29255) - 6839826..6839960 (+) 135 Protein_5764 glutamate-1-semialdehyde 2,1-aminomutase -
  HF313_RS29340 (HF313_29260) corA 6840101..6841066 (-) 966 WP_126076628.1 magnesium/cobalt transporter CorA -
  HF313_RS29345 (HF313_29265) - 6841148..6841585 (-) 438 WP_126076629.1 DUF4124 domain-containing protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14670.98 Da        Isoelectric Point: 7.9062

>NTDB_id=436490 HF313_RS29315 WP_126076625.1 6836816..6837217(-) (pilG) [Massilia atriviolacea strain SOD]
MTTLPQPNVLKIMVIDDSSTIRRSAEIFLTQAGYQVVLAEDGFDALAKINDHHPSLIFCDILMPRLDGYQTCALIKRSAR
FHATPVLMLSSKDGLFDRARGLMVGSSAYLTKPFSKDSLLSAVREHTADTVSK

Nucleotide


Download         Length: 402 bp        

>NTDB_id=436490 HF313_RS29315 WP_126076625.1 6836816..6837217(-) (pilG) [Massilia atriviolacea strain SOD]
ATGACGACATTGCCGCAACCGAACGTACTGAAAATCATGGTGATCGACGACAGCAGCACGATTCGTCGCTCGGCCGAGAT
TTTCCTCACCCAGGCAGGCTATCAGGTGGTGCTGGCCGAAGACGGCTTCGATGCCCTGGCCAAGATTAACGACCATCATC
CGTCGCTGATTTTCTGCGACATCCTGATGCCGCGCCTCGATGGTTACCAGACTTGCGCGCTGATCAAGCGCAGTGCGCGT
TTCCACGCCACCCCGGTACTGATGCTGTCATCGAAAGATGGCTTGTTCGACCGGGCGCGCGGCCTGATGGTCGGCTCCTC
CGCCTACCTGACCAAACCCTTTAGCAAAGACAGTCTGCTTAGCGCAGTGCGCGAGCATACTGCCGACACCGTTTCAAAAT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.025

89.474

0.564