Detailed information NTG0436464

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: INP98_RS07615
• Genome accession: NZ_CP063112
• Coordinates: 1577925..1579346 (+)
• Length: 473 a.a.
• NCBI ID: WP_197569783.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae strain M1C149_1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1572925..1584346

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INP98_RS07610 (INP98_07600)	-	1577050..1577922 (+)	873	WP_007243099.1	DMT family transporter	-
INP98_RS07615 (INP98_07605)	sbcB	1577925..1579346 (+)	1422	WP_197569783.1	exodeoxyribonuclease I	Machinery gene
INP98_RS07620 (INP98_07610)	ftnA	1580115..1580600 (+)	486	WP_005699391.1	non-heme ferritin	-
INP98_RS07625 (INP98_07615)	ftnA	1580621..1581121 (+)	501	WP_197569784.1	non-heme ferritin	-
INP98_RS07635 (INP98_07625)	ttcA	1581459..1582388 (+)	930	WP_197569785.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
INP98_RS07640 (INP98_07630)	-	1582390..1582719 (+)	330	WP_197569786.1	TusE/DsrC/DsvC family sulfur relay protein	-
INP98_RS07645 (INP98_07635)	-	1582827..1583813 (+)	987	WP_197569787.1	FecCD family ABC transporter permease	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54482.75 Da
• Isoelectric Point: 5.0408

>NTDB_id=436464 INP98_RS07615 WP_197569783.1 1577925..1579346(+) (sbcB) [Haemophilus parainfluenzae strain M1C149_1]
MANNFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGIPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDIDNLLSKSAVDLRQDLYTKKSELEERGVSSVPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQQCLDNLAKLRQSLDIREKVIEIFSEEREFEPSDNVETELYNGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAAKFEESLQQLAEEYSDNPTRLNLLQQVYEYGAKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=436464 INP98_RS07615 WP_197569783.1 1577925..1579346(+) (sbcB) [Haemophilus parainfluenzae strain M1C149_1]
ATGGCAAACAATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCTGCTCAATT
TGCTGGTATTCGTACCGATGCAGATTTCAATATCATTGGTGAGCCTGTTATGTTGTATTGCAAGCAAACCAATGATTATT
TGCCCGCCCCGGAAGCCGTAATGGTCACAGGAATTACGCCACAAGAATGTAATGAAAAGGGGATTCCTGAACCTGAATTT
GCCGCAAAAATTCTAGCTGAGTTTTCACAACCTAATACTTGTGTGATGGGTTACAACAACATTCGTTATGACGATGAAAT
GACTCGTTATACCTTTTACCGTAACTTCATTGATCCCTATGAATATAGTTGGAAAAATGGTAATTCTCGTTGGGATTTAC
TGGATTTAGTGCGCGCCTGTTATGCTTTGCGTCCTGAAGGCATTAATTGGGCCTATGACGATGATGGAATACCAAGCTTC
CGCTTAGAAAAACTAACCAAAGCAAATGGCATTGAGCATGAAAATGCCCATGATGCAATGGCAGATGTGTATGCAACCAT
CGCCATGGCTAAATTGATCAAAGAAAAGCAGCCTAAATTATTTCAATTCTTCTTTGAGCATAGAGGTAAAAAGGAAATTG
AGAAACTGATCGACACAGCTGAAATGACACCATTAGTGCACGTTTCAGGCATGCTAGGGAATTATCGCGGTAATTGTGCT
TGGGTAGCACCATTAGCATGGCATCCAACTAATCAAAATGCCGTCATCGTCTGTGATTTATCTGGTGATATTGATAATTT
GCTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGCGAGCTAGAAGAAAGGGGAGTTTCATCAG
TTCCATTGAAATTGGTTCATATAAATAAATGCCCAATTTTGGCGCCTGCAAAAACGTTACTGCCTGAAAATGCAGCTCGT
TTAGGGATAGACAGACAACAATGCTTAGATAATTTAGCAAAATTGCGTCAATCCTTAGATATACGCGAGAAAGTTATTGA
AATCTTCTCAGAAGAACGAGAATTTGAGCCGAGTGATAATGTAGAAACGGAGCTTTATAACGGTTTCTTTAGCAATGCCG
ATAAAAACAATATGGCTATTTTACGGGATTTACCGGCCGAGAAATTAGCTGAACATGGTTTAGCATTTGAAGATAAACGA
ATTCCTGAATTGTTATTCCATTATCGTGCAAGACATTTCTACAAAACTCTAAATCGTGCAGAGCAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTGCGGCTAAATTTGAAGAAAGTTTACAACAGTTAGCAGAGGAATATTCGGATA
ATCCAACCAGACTGAATTTACTACAACAGGTTTATGAATATGGTGCAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-469)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.794	98.52	0.55